Evidence map›Paper›PMID 23536828›Full record

ArticlePloS one2013

Novel frem1-related mouse phenotypes and evidence of genetic interactions with gata4 and slit3.

Tyler F Beck, Oleg A Shchelochkov, Zhiyin Yu, Bum Jun Kim, Andrés Hernández-García, Hitisha P Zaveri, Colin Bishop, Paul A Overbeek, David W Stockton, Monica J Justice and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Frem1 activity is regulated by Sonic hedgehog signaling in the cranial neural crest mesenchyme during midfacial morphogenesis.Developmental dynamics : an official publication of the American Association of Anatomists · 2023
    Article
  5. Nephronectin is required to maintain right lung lobar separation during embryonic development.American journal of physiology. Lung cellular and molecular physiology · 2023
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. FBN1 contributing to familial congenital diaphragmatic hernia.American journal of medical genetics. Part A · 2015
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Tyler F BeckDepartments of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
Oleg A Shchelochkov
Zhiyin Yu
Bum Jun Kim
Andrés Hernández-García
Hitisha P Zaveri
Colin Bishop
Paul A Overbeek
David W Stockton
Monica J Justice
Daryl A Scott
Baylor College of Medicine · USForest Institute · USMichigan United · USUniversity of Iowa · US

Funding

UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TOLIAS, KIMBERLY R · 1988 to 2013
$29.4M
MUTATIONS IN DEVELOPMENTAL PATHWAYS BY ENU MUTAGENESISU01HD039372 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI JUSTICE, MONICA JEAN · 2000 to 2005
$17.3M
PROGRAM IN HUMAN MOLECULAR GENETICST32GM008307 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SHAULSKY, GAD · 1990 to 2020
$6.6M
Retinoid-Related Genes in Diaphragm and Cardiac DevelopmentR01HD064667 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI SCOTT, DARYL ARMSTRONG · 2010 to 2014
$1.5M
Recessive Ocular Phenotypes from Murine ENU MutagenesisR03EY014854 · NEI · BAYLOR COLLEGE OF MEDICINE · PI STOCKTON, DAVID W · 2003 to 2005
$444k
NEI NIH HHS R03 EY014854NEI NIH HHS R03EY014854NICHD NIH HHS 5P30 HD024064NICHD NIH HHS P30 HD024064NICHD NIH HHS R01 HD064667NICHD NIH HHS R01HD064667NICHD NIH HHS U01 HD039372NICHD NIH HHS U01HD39372NIGMS NIH HHS T32 GM008307
6 · The paper itself

Abstract

The FRAS1-related extracellular matrix 1 (FREM1) gene encodes an extracellular matrix protein that plays a critical role in the development of multiple organ systems. In humans, recessive mutations in FREM1 cause eye defects, congenital diaphragmatic hernia, renal anomalies and anorectal malformations including anteriorly placed anus. A similar constellation of findings-microphthalmia, cryptophthalmos, congenital diaphragmatic hernia, renal agenesis and rectal prolapse-have been described in FREM1-deficient mice. In this paper, we identify a homozygous Frem1 missense mutation (c.1687A>T, p.Ile563Phe) in an N-ethyl-N-nitrosourea (ENU)-derived mouse strain, crf11, with microphthalmia, cryptophthalmos, renal agenesis and rectal prolapse. This mutation affects a highly conserved residue in FREM1's third CSPG domain. The p.Ile563Phe change is predicted to be deleterious and to cause decreased FREM1 protein stability. The crf11 allele also fails to complement the previously described eyes2 allele of Frem1 (p.Lys826*) providing further evidence that the crf11 phenotype is due to changes affecting Frem1 function. We then use mice bearing the crf11 and eyes2 alleles to identify lung lobulation defects and decreased anogenital distance in males as novel phenotypes associated with FREM1 deficiency in mice. Due to phenotypic overlaps between FREM1-deficient mice and mice that are deficient for the retinoic acid-responsive transcription factor GATA4 and the extracellular matrix protein SLIT3, we also perform experiments to look for in vivo genetic interactions between the genes that encode these proteins. These experiments reveal that Frem1 interacts genetically with Gata4 in the development of lung lobulation defects and with Slit3 in the development of renal agenesis. These results demonstrate that FREM1-deficient mice faithfully recapitulate many of the phenotypes seen in individuals with FREM1 deficiency and that variations in GATA4 and SLIT3 expression modulate some FREM1-related phenotypes in mice.

Indexed as

Epistasis, GeneticPhenotypeAbnormalities, MultipleAllelesAmino Acid SequenceAnimalsBase SequenceCongenital AbnormalitiesExtracellular Matrix ProteinsGATA4 Transcription FactorGene Expression Regulation, DevelopmentalGenetic Association StudiesHaploinsufficiencyHomozygoteKidneyKidney DiseasesExtracellular Matrix ProteinsFras1 protein, mouseFrem1 protein, mouseFrem2 protein, mouseGATA4 Transcription FactorMembrane ProteinsSlit3 protein, mouse

Identifiers

PMID23536828
PMCPMC3594180
OpenAlexW2063960196

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.