Evidence map›Paper›PMID 23536679›Full record

ArticleJournal of virology2013

T cells target APOBEC3 proteins in human immunodeficiency virus type 1-infected humans and simian immunodeficiency virus-infected Indian rhesus macaques.

Stéphane Champiat, Keith E Garrison, Rui André Saraiva Raposo, Benjamin J Burwitz, Jason Reed, Ravi Tandon, Vanessa A York, Laura P Newman, Francesca A Nimityongskul, Nancy A Wilson and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 4 countries.

Stéphane ChampiatDivision of Experimental Medicine, Department of Medicine, University of California San Francisco, San Francisco, California, USA.
Keith E Garrison
Rui André Saraiva Raposo
Benjamin J Burwitz
Jason Reed
Ravi Tandon
Vanessa A York
Laura P Newman
Francesca A Nimityongskul
Nancy A Wilson
Rafael R Almeida
Jeffrey N Martin
Steven G Deeks
Michael G Rosenberg
Andrew A Wiznia
Gerald E Spotts
Christopher D Pilcher
Fredrick M Hecht
Mario A Ostrowski
Jonah B Sacha
Douglas F Nixon
University of California, San Francisco · USUniversity of Wisconsin–Madison · USJacobi Medical Center · USSan Francisco General Hospital · USOregon National Primate Research Center · USPitié-Salpêtrière Hospital · FRUniversidade de São Paulo · BRUniversity of Toronto · CA

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Monica Gandhi · 1988 to 2026
$93.6M
Transmission and Persistence of CTL and Drug Resistance MutationsP01AI071713 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2007 to 2011
$14.3M
A novel APOBEC-based vaccine approach for HIVR33AI093179 · NIAID · GEORGE WASHINGTON UNIVERSITY · PI NIXON, DOUGLAS F · 2014 to 2015
$1.5M
Preventing the Establishment of Enfuvirtide-resistance in the Latent ReservoirK24AI069994 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2007 to 2016
$1.5M
A novel APOBEC-based vaccine approach for HIVR21AI093179 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NIXON, DOUGLAS F · 2011 to 2012
$456k
NIAID NIH HHS AI027763NIAID NIH HHS AI069994NIAID NIH HHS AI071713NIAID NIH HHS AI093179NIAID NIH HHS K24 AI069994NIAID NIH HHS P01 AI071713NIAID NIH HHS P30 AI027763NIAID NIH HHS R21 AI093179NIAID NIH HHS R33 AI093179NIH HHS OD 011092NIH HHS P51 OD011092
6 · The paper itself

Abstract

APOBEC3 proteins mediate potent antiretroviral activity by hypermutating the retroviral genome during reverse transcription. To counteract APOBEC3 and gain a replicative advantage, lentiviruses such as human immunodeficiency virus type 1 (HIV-1) and simian immunodeficiency virus (SIV) have evolved the Vif protein, which targets APOBEC3 proteins for proteasomal degradation. However, the proteasome plays a critical role in the generation of T cell peptide epitopes. Whether Vif-mediated destruction of APOBEC3 proteins leads to the generation and presentation of APOBEC3-derived T cell epitopes on the surfaces of lentivirus-infected cells remains unknown. Here, using peptides derived from multiple Vif-sensitive APOBEC3 proteins, we identified APOBEC3-specific T cell responses in both HIV-1-infected patients and SIV-infected rhesus macaques. These results raise the possibility that these T cell responses may be part of the larger antiretroviral immune response.

Indexed as

AdultAnimalsAPOBEC-3G DeaminaseCD8-Positive T-LymphocytesCytidine DeaminaseCytosine DeaminaseFemaleGene Products, vifHIV-1HIV InfectionsHumansMacaca mulattaMaleSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusAPOBEC3F protein, humanAPOBEC-3G DeaminaseAPOBEC3G protein, humanCytidine DeaminaseCytosine DeaminaseGene Products, vif

Identifiers

PMID23536679
PMCPMC3648095
OpenAlexW1982822486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.