Evidence map›Paper›PMID 23536181›Full record

ArticleThe Journal of biological chemistry2013

Specificity of Processing α-glucosidase I is guided by the substrate conformation: crystallographic and in silico studies.

Megan K Barker, David R Rose

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Genetic and enzymatic characterization of Amy13E fromApplied and environmental microbiology · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Megan K BarkerDepartment of Medical Biophysics, University of Toronto, Ontario Cancer Institute, Princess Margaret Hospital, Toronto, Ontario M5G 2M9, Canada. megan.barker@utoronto.ca
David R Rose
Ontario Institute for Cancer Research · CAPrincess Margaret Cancer Centre · CA

Funding

X-RAY STUDY OF HORMONE-RECEPTOR AND PROTEIN-ANTIBODY COMPLEXESP41RR007707 · NCRR · UNIVERSITY OF CHICAGO · PI YANG, XIANGZHONG · 2002 to 2011
$17.3M
Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
X-RAY CRYSTALLOGRAPHY OF MACROMOLECULESR01GM053163 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MINOR, WLADEK, OTWINOWSKI, ZBYSZEK · 1996 to 2014
$6.3M
BioCARS: A Synchroton Structural Biology ResourceP41GM103543 · NIGMS · UNIVERSITY OF CHICAGO · PI MOFFAT, JOHN KEITH · 2012 to 2012
$1.1M
CIHR MOP111237NCRR NIH HHS 5P41RR007707NCRR NIH HHS P41 RR007707NIGMS NIH HHS 8P41GM103543NIGMS NIH HHS GM103485NIGMS NIH HHS GM-53163NIGMS NIH HHS P41 GM103485NIGMS NIH HHS P41 GM103543NIGMS NIH HHS R01 GM053163
6 · The paper itself

Abstract

backgroundThe enzyme “GluI” is key to the synthesis of critical glycoproteins in the cell.

resultsWe have determined the structure of GluI, and modeled binding with its unique sugar substrate.

conclusionThe specificity of this interaction derives from a unique conformation of the substrate. SIGNIFICANCE: Understanding the mechanism of the enzyme is of basic importance and relevant to potential development of antiviral inhibitors. Processing α-glucosidase I (GluI) is a key member of the eukaryotic N-glycosylation processing pathway, selectively catalyzing the first glycoprotein trimming step in the endoplasmic reticulum. Inhibition of GluI activity impacts the infectivity of enveloped viruses; however, despite interest in this protein from a structural, enzymatic, and therapeutic standpoint, little is known about its structure and enzymatic mechanism in catalysis of the unique glycan substrate Glc3Man9GlcNAc2. The first structural model of eukaryotic GluI is here presented at 2-Å resolution. Two catalytic residues are proposed, mutations of which result in catalytically inactive, properly folded protein. Using Autodocking methods with the known substrate and inhibitors as ligands, including a novel inhibitor characterized in this work, the active site of GluI was mapped. From these results, a model of substrate binding has been formulated, which is most likely conserved in mammalian GluI.

Indexed as

Molecular Docking Simulation1-Deoxynojirimycinalpha-GlucosidasesCarbohydrate ConformationCarbohydrate SequenceCatalytic DomainCrystallography, X-RayGlucoseGlycoside Hydrolase InhibitorsHydrogen BondingKineticsMembrane GlycoproteinsMolecular Sequence DataProtein BindingProtein Structure, SecondarySaccharomyces cerevisiae1-Deoxynojirimycinalpha-GlucosidasesCWH41 protein, S cerevisiaeGlucoseGlycoside Hydrolase InhibitorsMembrane GlycoproteinsmiglitolSaccharomyces cerevisiae ProteinsTrisaccharidesCarbohydrate GlycoproteinComputer ModelingDockingEnzyme StructureGlycobiologyGlycosylationPost-translational ModificationX-ray Crystallography

Identifiers

PMID23536181
PMCPMC3650392
OpenAlexW2094906302

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.