Evidence map›Paper›PMID 23535732›Full record

ArticleNature genetics2013

Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.

Rosalind A Eeles, Ali Amin Al Olama, Sara Benlloch, Edward J Saunders, Daniel A Leongamornlert, Malgorzata Tymrakiewicz, Maya Ghoussaini, Craig Luccarini, Joe Dennis, Sarah Jugurnauth-Little and 139 more

Abstract read
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 355 papers, 18 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
355citing papers in PubMed, 18 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

355 citing papers in PubMed, 18 syntheses or guidelines pooled it.

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295 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

149 authors.

Rosalind A EelesThe Institute of Cancer Research, Sutton, UK. rosalind.eeles@icr.ac.uk
Ali Amin Al Olama
Sara Benlloch
Edward J Saunders
Daniel A Leongamornlert
Malgorzata Tymrakiewicz
Maya Ghoussaini
Craig Luccarini
Joe Dennis
Sarah Jugurnauth-Little
Tokhir Dadaev
David E Neal
Freddie C Hamdy
Jenny L Donovan
Ken Muir
Graham G Giles
Gianluca Severi
Fredrik Wiklund
Henrik Gronberg
Christopher A Haiman
Fredrick Schumacher
Brian E Henderson
Loic Le Marchand
Sara Lindstrom
Peter Kraft
David J Hunter
Susan Gapstur
Stephen J Chanock
Sonja I Berndt
Demetrius Albanes
Gerald Andriole
Johanna Schleutker
Maren Weischer
Federico Canzian
Elio Riboli
Tim J Key
Ruth C Travis
Daniele Campa
Sue A Ingles
Esther M John
Richard B Hayes
Paul D P Pharoah
Nora Pashayan
Kay-Tee Khaw
Janet L Stanford
Elaine A Ostrander
Lisa B Signorello
Stephen N Thibodeau
Dan Schaid
Christiane Maier
Walther Vogel
Adam S Kibel
Cezary Cybulski
Jan Lubinski
Lisa Cannon-Albright
Hermann Brenner
Jong Y Park
Radka Kaneva
Jyotsna Batra
Amanda B Spurdle
Judith A Clements
Manuel R Teixeira
Ed Dicks
Andrew Lee
Alison M Dunning
Caroline Baynes
Don Conroy
Melanie J Maranian
Shahana Ahmed
Koveela Govindasami
Michelle Guy
Rosemary A Wilkinson
Emma J Sawyer
Angela Morgan
David P Dearnaley
Alan Horwich
Robert A Huddart
Vincent S Khoo
Christopher C Parker
Nicholas J Van As
Christopher J Woodhouse
Alan Thompson
Tim Dudderidge
Chris Ogden
Colin S Cooper
Artitaya Lophatananon
Angela Cox
Melissa C Southey
John L Hopper
Dallas R English
Markus Aly
Jan Adolfsson
Jiangfeng Xu
Siqun L Zheng
Meredith Yeager
Rudolf Kaaks
W Ryan Diver
Mia M Gaudet
Mariana C Stern
Roman Corral
Amit D Joshi
Ahva Shahabi
Tiina Wahlfors
Teuvo L J Tammela
Anssi Auvinen
Jarmo Virtamo
Peter Klarskov
Børge G Nordestgaard
M Andreas Røder
Sune F Nielsen
Stig E Bojesen
Afshan Siddiq
Liesel M Fitzgerald
Suzanne Kolb
Erika M Kwon
Danielle M Karyadi
William J Blot
Wei Zheng
Qiuyin Cai
Shannon K McDonnell
Antje E Rinckleb
Bettina Drake
Graham Colditz
Dominika Wokolorczyk
Robert A Stephenson
Craig Teerlink
Heiko Muller
Dietrich Rothenbacher
Thomas A Sellers
Hui-Yi Lin
Chavdar Slavov
Vanio Mitev
Felicity Lose
Srilakshmi Srinivasan
Sofia Maia
Paula Paulo
Ethan Lange
Kathleen A Cooney
Antonis C Antoniou
Daniel Vincent
François Bacot
Daniel C Tessier
COGS–Cancer Research UK GWAS–ELLIPSE (part of GAME-ON) Initiative
Australian Prostate Cancer Bioresource
UK Genetic Prostate Cancer Study Collaborators/British Association of Urological Surgeons' Section of Oncology
UK ProtecT (Prostate testing for cancer and Treatment) Study Collaborators
PRACTICAL (Prostate Cancer Association Group to Investigate Cancer-Associated Alterations in the Genome) Consortium
Zsofia Kote-Jarai
Douglas F Easton

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI John L. Cleveland · 1998 to 2026
$93.5M
Laboratory of Translational GenomicsZIACP010201 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI PROKUNINA-OLSSON, LIUDMILA · 2010 to 2025
$91.2M
Southern Community Cohort StudyR01CA092447 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BLOT, WILLIAM J., ZHENG, WEI · 2001 to 2015
$74.0M
UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI CORNELIA M ULRICH · 1986 to 2026
$72.6M
Alpha-Tocopherol, Beta-Carotene Cancer Prevention (ATBC) StudyZIACP010195 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ALBANES, DEMETRIUS · 2009 to 2025
$22.5M
Finding Genes for Human Prostate CancerZIAHG200325 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI OSTRANDER, ELAINE · 2009 to 2021
$17.7M
Predoctoral Training Program in Human GeneticsT32GM007814 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 1985 to 2021
$10.6M
Studies of Alpha-tocopherol and Beta-Carotene in FinlandZ01CP010195 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ALBANES, DEMETRIUS · 2007 to 2008
$3.9M
NSAIDS and Other Medications in Prostate Cancer EtiologyR01CA092579 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STANFORD, JANET L · 2001 to 2005
$3.2M
Southern California Clinical and Translational Science InstituteTL1TR000132 · NCATS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BUCHANAN, THOMAS A · 2012 to 2014
$491k
GENETIC POLYMORPHISMS AND PROSTATE CANCER RISKR01CA082664 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STANFORD, JANET L · 1999 to 2001
$350k
PROSTATE CANCER IN RELATION TO VASECTOMYR01CA056678 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STANFORD, JANET L · 1993 to 1997
–
Cancer Research UK 10118Cancer Research UK 10124Cancer Research UK 10588Cancer Research UK 11022Cancer Research UK 11174Cancer Research UK 13065Cancer Research UK 14136Cancer Research UK 15007Cancer Research UK 16561Cancer Research UK 16565Intramural NIH HHS Z01 CP010195Intramural NIH HHS Z99 CA999999Intramural NIH HHS ZIA CP010195Medical Research Council G0401527Medical Research Council G0900871Medical Research Council G1000143NCATS NIH HHS TL1 TR000132NCI NIH HHS P30 CA042014NCI NIH HHS P30 CA076292NCI NIH HHS R01 CA092447NCI NIH HHS R01 CA092579NCI NIH HHS Y99 CA999999NIGMS NIH HHS T32 GM007814Prostate Cancer UK G2011/36
6 · The paper itself

Abstract

Prostate cancer is the most frequently diagnosed cancer in males in developed countries. To identify common prostate cancer susceptibility alleles, we genotyped 211,155 SNPs on a custom Illumina array (iCOGS) in blood DNA from 25,074 prostate cancer cases and 24,272 controls from the international PRACTICAL Consortium. Twenty-three new prostate cancer susceptibility loci were identified at genome-wide significance (P < 5 × 10(-8)). More than 70 prostate cancer susceptibility loci, explaining ∼30% of the familial risk for this disease, have now been identified. On the basis of combined risks conferred by the new and previously known risk loci, the top 1% of the risk distribution has a 4.7-fold higher risk than the average of the population being profiled. These results will facilitate population risk stratification for clinical studies.

Indexed as

Genetic Predisposition to DiseaseCase-Control StudiesCooperative BehaviorGenetic LociGenome-Wide Association StudyGenotypeHumansMaleMeta-Analysis as TopicOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideProstatic NeoplasmsRisk Factors

Identifiers

PMID23535732
PMCPMC3832790

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.