Evidence map›Paper›PMID 23533329›Full record

ArticleArchaea (Vancouver, B.C.)2013

Crystal structure of PAV1-137: a protein from the virus PAV1 that infects Pyrococcus abyssi.

N Leulliot, S Quevillon-Cheruel, M Graille, C Geslin, D Flament, M Le Romancer, H van Tilbeurgh

Open access · hybridAbstract read
In one paragraph

Article in Archaea (Vancouver, B.C.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

N LeulliotInstitut de Biochimie et de Biophysique Moléculaire et Cellulaire, CNRS-UMR 8619, IFR115, Université Paris-Sud, Bâtiment 430, 91405 Orsay, France.
S Quevillon-Cheruel
M Graille
C Geslin
D Flament
M Le Romancer
H van Tilbeurgh
Centre National de la Recherche Scientifique · FRUniversité Paris-Sud · FRInstitut Universitaire Européen de la Mer · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pyrococcus abyssi virus 1 (PAV1) was the first virus particle infecting a hyperthermophilic Euryarchaeota (Pyrococcus abyssi strain GE23) that has been isolated and characterized. It is lemon shaped and is decorated with a short fibered tail. PAV1 morphologically resembles the fusiform members of the family Fuselloviridae or the genus Salterprovirus. The 18 kb dsDNA genome of PAV1 contains 25 predicted genes, most of them of unknown function. To help assigning functions to these proteins, we have initiated structural studies of the PAV1 proteome. We determined the crystal structure of a putative protein of 137 residues (PAV1-137) at a resolution of 2.2 Å. The protein forms dimers both in solution and in the crystal. The fold of PAV1-137 is a four- α -helical bundle analogous to those found in some eukaryotic adhesion proteins such as focal adhesion kinase, suggesting that PAV1-137 is involved in protein-protein interactions.

Indexed as

Archaeal VirusesCrystallography, X-RayModels, MolecularProtein ConformationProtein MultimerizationPyrococcus abyssiViral ProteinsViral Proteins

Identifiers

PMID23533329
PMCPMC3603647
OpenAlexW1985991362

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.