Evidence map›Paper›PMID 23533167›Full record

ArticleJournal of cellular biochemistry2013

Methylation of the PTPRO gene in human hepatocellular carcinoma and identification of VCP as its substrate.

Shu-hao Hsu, Tasneem Motiwala, Satavisha Roy, Rainer Claus, Mufaddal Mustafa, Christoph Plass, Michael A Freitas, Kalpana Ghoshal, Samson T Jacob

Open access · greenAbstract read
In one paragraph

Article in Journal of cellular biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

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  8. [Estrogen and its receptors in hepatitis B virus-related hepatocellular carcinoma].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Shu-hao HsuDepartment of Molecular & Cellular Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA.
Tasneem Motiwala
Satavisha Roy
Rainer Claus
Mufaddal Mustafa
Christoph Plass
Michael A Freitas
Kalpana Ghoshal
Samson T Jacob
The Ohio State University · USThe Ohio State University Wexner Medical Center · USHeidelberg University · DE

Funding

MOLECULAR MECHANISMS OF DIET-INDUCED CARCINOGENESISR01CA086978 · NCI · OHIO STATE UNIVERSITY · PI GHOSHAL, KALPANA, JACOB, SAMSON T · 2002 to 2018
$4.9M
Role of microRNA-122 in hepatocarcinogenesis using conditional knock out miceR01DK088076 · NIDDK · OHIO STATE UNIVERSITY · PI GHOSHAL, KALPANA · 2010 to 2013
$1.3M
NCI NIH HHS CA086978NCI NIH HHS R01 CA086978NIDDK NIH HHS DK088076NIDDK NIH HHS R01 DK088076
6 · The paper itself

Abstract

We have previously reported that the gene encoding protein tyrosine phosphatase receptor type-O (PTPRO) is suppressed by promoter methylation in a rat model of hepatocellular carcinoma (HCC) and it functions as tumor suppressor in leukemia and lung cancer. Here, we explored the methylation and expression of PTPRO as well as its function in human HCC. MassARRAY analysis of primary human HCC and matching liver samples (n = 24) revealed significantly higher (P = 0.004) methylation density at the promoter CGI in tumors. Combined bisulfite restriction analysis (COBRA) of another set of human HCC samples (n = 17) demonstrated that the CGI was methylated in 29% of tumors where expression of PTPRO was lower than that in corresponding matching livers. A substrate-trapping mutant of PTPRO that stabilizes the bound substrates was used to identify its novel substrate(s). VCP/p97 was found to be a PTPRO substrate by mass spectrometry of the peptides pulled down by the substrate-trapping mutant of PTPRO. Tyrosyl dephosphorylation of VCP following ectopic expression of wild-type PTPRO in H293T and HepG2 cells confirmed that it is a bona fide substrate of PTPRO. Treatment of PTPRO overexpressing HepG2 cells with Doxorubicin, a DNA damaging drug commonly used in therapy of primary HCC, sensitized these cells to this potent anticancer drug that correlated with dephosphorylation of VCP. Taken together, these results demonstrate methylation and downregulation of PTPRO in a subset of primary human HCC and establish VCP as a novel functionally important substrate of this tyrosine phosphatase that could be a potential molecular target for HCC therapy.

Indexed as

DNA MethylationGenes, NeoplasmAdenosine TriphosphatasesAnimalsAntibiotics, AntineoplasticCarcinoma, HepatocellularCell Cycle ProteinsDNA, NeoplasmDown-RegulationDoxorubicinHep G2 CellsHumansLiver NeoplasmsRatsReceptor-Like Protein Tyrosine Phosphatases, Class 3Tumor Suppressor ProteinsAdenosine TriphosphatasesAntibiotics, AntineoplasticCell Cycle ProteinsDNA, NeoplasmDoxorubicinPTPRO protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 3Tumor Suppressor ProteinsValosin Containing ProteinVCP protein, humanVcp protein, rat

Identifiers

PMID23533167
PMCPMC4199230
OpenAlexW2091803827

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.