Evidence map›Paper›PMID 23532089›Full record

ArticleScientific reports2013

UV-radiation induced disruption of dry-cavities in human γD-crystallin results in decreased stability and faster unfolding.

Zhen Xia, Zaixing Yang, Tien Huynh, Jonathan A King, Ruhong Zhou

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Phototoxicity of environmental radiations in human lens: revisiting the pathogenesis of UV-induced cataract.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2019
    Review
  5. Article
  6. Article
  7. Reactive cysteine residues in the oxidative dimerization and CuBiochimica et biophysica acta. Molecular basis of disease · 2018
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. The βγ-crystallins: native state stability and pathways to aggregation.Progress in biophysics and molecular biology · 2014
    Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Zhen XiaComputational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598, USA.
Zaixing Yang
Tien Huynh
Jonathan A King
Ruhong Zhou
IBM Research - Thomas J. Watson Research Center · USColumbia University · USMassachusetts Institute of Technology · USZhejiang University · CN

Funding

Human gammaD-Crystallin Folding Misfolding &Fibril FormR01EY015834 · NEI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KING, JONATHAN ALAN · 2005 to 2014
$3.5M
NEI NIH HHS R01 EY015834
6 · The paper itself

Abstract

Age-onset cataracts are believed to be expedited by the accumulation of UV-damaged human γD-crystallins in the eye lens. Here we show with molecular dynamics simulations that the stability of γD-crystallin is greatly reduced by the conversion of tryptophan to kynurenine due to UV-radiation, consistent with previous experimental evidences. Furthermore, our atomic-detailed results reveal that kynurenine attracts more waters and other polar sidechains due to its additional amino and carbonyl groups on the damaged tryptophan sidechain, thus breaching the integrity of nearby dry center regions formed by the two Greek key motifs in each domain. The damaged tryptophan residues cause large fluctuations in the Tyr-Trp-Tyr sandwich-like hydrophobic clusters, which in turn break crucial hydrogen-bonds bridging two β-strands in the Greek key motifs at the "tyrosine corner". Our findings may provide new insights for understanding of the molecular mechanism of the initial stages of UV-induced cataractogenesis.

Indexed as

Ultraviolet RaysCataractgamma-CrystallinsHumansHydrophobic and Hydrophilic InteractionsKynurenineMolecular Dynamics SimulationProtein StabilityProtein UnfoldingTryptophanTyrosineCRYGD protein, humangamma-CrystallinsKynurenineTryptophanTyrosine

Identifiers

PMID23532089
PMCPMC3609025
OpenAlexW2150667015

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.