Evidence map›Paper›PMID 23531166›Full record

ArticleMolecular microbiology2013

Putrescine catabolism is a metabolic response to several stresses in Escherichia coli.

Barbara L Schneider, V James Hernandez, Larry Reitzer

Abstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 80 citations in OpenAlex.

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  12. RpoS and the bacterial general stress response.Microbiology and molecular biology reviews : MMBR · 2024
    Review
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Barbara L SchneiderDepartment of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, TX 75080, USA.
V James Hernandez
Larry Reitzer
The University of Texas at Dallas · USThe University of Texas Southwestern Medical Center · US

Funding

Sulfur stress in Salmonella entericaR01GM085536 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI REITZER, LAWRENCE J · 2009 to 2010
$474k
NIGMS NIH HHS GM085536NIGMS NIH HHS R01 GM085536
6 · The paper itself

Abstract

Genes whose products degrade arginine and ornithine, precursors of putrescine synthesis, are activated by either regulators of the nitrogen-regulated (Ntr) response or σ(S) -RNA polymerase. To determine if dual control regulates a complete putrescine catabolic pathway, we examined expression of patA and patD, which specify the first two enzymes of one putrescine catabolic pathway. Assays of PatA (putrescine transaminase) activity and β-galactosidase from cells with patA-lacZ transcriptional and translational fusions indicate dual control of patA transcription and putrescine-stimulated patA translation. Similar assays for PatD indicate that patD transcription required σ(S) -RNA polymerase, and Nac, an Ntr regulator, enhanced the σ(S) -dependent transcription. Since Nac activation via σ(S) -RNA polymerase is without precedent, transcription with purified components was examined and the results confirmed this conclusion. This result indicates that the Ntr regulon can intrude into the σ(S) regulon. Strains lacking both polyamine catabolic pathways have defective responses to oxidative stress, high temperature and a sublethal concentration of an antibiotic. These defects and the σ(S) -dependent expression indicate that polyamine catabolism is a core metabolic response to stress.

Indexed as

RegulonStress, PhysiologicalAmino Acid Sequencebeta-GalactosidaseDNA-Directed RNA PolymerasesEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialGenes, BacterialMolecular Sequence DataPutrescineRecombinant Fusion ProteinsTranscription, Geneticbeta-GalactosidaseDNA-Directed RNA PolymerasesEscherichia coli ProteinsPutrescineRecombinant Fusion Proteins

Identifiers

PMID23531166
PMCPMC3633691
OpenAlexW1607959543

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.