Evidence map›Paper›PMID 23530057›Full record

ArticleMolecular and cellular biology2013

Structural basis for activation of ZAP-70 by phosphorylation of the SH2-kinase linker.

Qingrong Yan, Tiago Barros, Patrick R Visperas, Sebastian Deindl, Theresa A Kadlecek, Arthur Weiss, John Kuriyan

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 116 citations in OpenAlex.

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  17. TULA Proteins in Men, Mice, Hens, and Lice: Welcome to the Family.International journal of molecular sciences · 2023
    Review
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Qingrong YanDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Tiago Barros
Patrick R Visperas
Sebastian Deindl
Theresa A Kadlecek
Arthur Weiss
John Kuriyan
QB3 · USHoward Hughes Medical Institute · USUniversity of California, Berkeley · USUniversity of California, San Francisco · US

Funding

Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARTHUR WEISS · 2011 to 2026
$31.1M
NIAID NIH HHS P01 AI091580
6 · The paper itself

Abstract

Serial activation of the tyrosine kinases Lck and ZAP-70 initiates signaling downstream of the T cell receptor. We previously reported the structure of an autoinhibited ZAP-70 variant in which two regulatory tyrosine residues (315 and 319) in the SH2-kinase linker were replaced by phenylalanine. We now present a crystal structure of ZAP-70 in which Tyr 315 and Tyr 319 are not mutated, leading to the recognition of a five-residue sequence register error in the SH2-kinase linker of the original crystallographic model. The revised model identifies distinct roles for these two tyrosines. As seen in a recently reported structure of the related tyrosine kinase Syk, Tyr 315 of ZAP-70 is part of a hydrophobic interface between the regulatory apparatus and the kinase domain, and the integrity of this interface would be lost upon engagement of doubly phosphorylated peptides by the SH2 domains. Tyr 319 is not necessarily dislodged by SH2 engagement, which activates ZAP-70 only ∼5-fold in vitro. In contrast, phosphorylation by Lck activates ZAP-70 ∼100-fold. This difference is due to the ability of Tyr 319 to suppress ZAP-70 activity even when the SH2 domains are dislodged from the kinase domain, providing stringent control of ZAP-70 activity downstream of Lck.

Indexed as

Adaptor Proteins, Signal TransducingCrystallography, X-RayFluorescence Resonance Energy TransferGRB2 Adaptor ProteinHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsIntracellular Signaling Peptides and ProteinsLymphocyte Specific Protein Tyrosine Kinase p56(lck)Membrane ProteinsModels, MolecularPhosphorylationProtein ConformationProtein Structure, TertiaryProtein-Tyrosine Kinasessrc-Family KinasesAdaptor Proteins, Signal TransducingGRB2 Adaptor ProteinGRB2 protein, humanIntracellular Signaling Peptides and ProteinsLAT protein, humanLymphocyte Specific Protein Tyrosine Kinase p56(lck)Membrane ProteinsProtein-Tyrosine Kinasessrc-Family KinasesSyk KinaseSYK protein, humanTyrosineZAP-70 Protein-Tyrosine Kinase

Identifiers

PMID23530057
PMCPMC3648074
OpenAlexW2103089470

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.