Evidence map›Paper›PMID 23530056›Full record

ArticleMolecular and cellular biology2013

Arkadia, a novel SUMO-targeted ubiquitin ligase involved in PML degradation.

Yigit Erker, Helene Neyret-Kahn, Jacob S Seeler, Anne Dejean, Azeddine Atfi, Laurence Levy

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 107 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Multifaceted roles of SUMO in DNA metabolism.Nucleus (Austin, Tex.) · 2024
    Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. SUMO control of centromere homeostasis.Frontiers in cell and developmental biology · 2023
    Review
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Yigit ErkerLaboratory of Cell Signaling and Carcinogenesis, INSERM UMR938, Paris, France.
Helene Neyret-Kahn
Jacob S Seeler
Anne Dejean
Azeddine Atfi
Laurence Levy
Inserm · FRToxicologie, Pharmacologie et Signalisation Cellulaire · FRCentre de Recherche Saint-Antoine · FRInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arkadia is a RING domain E3 ubiquitin ligase that activates the transforming growth factor β (TGF-β) pathway by inducing degradation of the inhibitor SnoN/Ski. Here we show that Arkadia contains three successive SUMO-interacting motifs (SIMs) that mediate noncovalent interaction with poly-SUMO2. We identify the third SIM (VVDL) of Arkadia to be the most relevant one in this interaction. Furthermore, we provide evidence that Arkadia can function as a SUMO-targeted ubiquitin ligase (STUBL) by ubiquitinating SUMO chains. While the SIMs of Arkadia are not essential for SnoN/Ski degradation in response to TGF-β, we show that they are necessary for the interaction of Arkadia with polysumoylated PML in response to arsenic and its concomitant accumulation into PML nuclear bodies. Moreover, Arkadia depletion leads to accumulation of polysumoylated PML in response to arsenic, highlighting a requirement of Arkadia for arsenic-induced degradation of polysumoylated PML. Interestingly, Arkadia homodimerizes but does not heterodimerize with RNF4, the other STUBL involved in PML degradation, suggesting that these two E3 ligases do not act synergistically but most probably act independently during this process. Altogether, these results identify Arkadia to be a novel STUBL that can trigger degradation of signal-induced polysumoylated proteins.

Indexed as

Amino Acid MotifsAmino Acid SequenceArsenicCell LineCell NucleusHumansIntracellular Signaling Peptides and ProteinsMolecular Sequence DataNuclear ProteinsPromyelocytic Leukemia ProteinProtein TransportProto-Oncogene ProteinsSmall Ubiquitin-Related Modifier ProteinsSumoylationTranscription FactorsTransforming Growth Factor betaArsenicIntracellular Signaling Peptides and ProteinsNuclear ProteinsPML protein, humanPromyelocytic Leukemia ProteinProto-Oncogene ProteinsRNF111 protein, humanRNF4 protein, humanSKIL protein, humanSmall Ubiquitin-Related Modifier ProteinsSUMO2 protein, humanTranscription FactorsTransforming Growth Factor betaTumor Suppressor ProteinsUbiquitin-Protein Ligases

Identifiers

PMID23530056
PMCPMC3648077
OpenAlexW2102306514

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.