Evidence map›Paper›PMID 23529664›Full record

ArticleImmunogenetics2013

Diversity and evolution of the highly polymorphic tandem repeat LEI0258 in the chicken MHC-B region.

Olympe Chazara, Chi-Sheng Chang, Nicolas Bruneau, Khalid Benabdeljelil, Jean-Claude Fotsa, Boniface B Kayang, N'Goran E Loukou, Richard Osei-Amponsah, Valentine Yapi-Gnaore, Issaka A K Youssao and 4 more

Abstract read
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Article in Immunogenetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 11 institutions in 8 countries.

Olympe ChazaraGénétique Animale et Biologie Intégrative, INRA, AgroParisTech, UMR 1313, Jouy-en-Josas, France. olympechazara@gmail.com
Chi-Sheng Chang
Nicolas Bruneau
Khalid Benabdeljelil
Jean-Claude Fotsa
Boniface B Kayang
N'Goran E Loukou
Richard Osei-Amponsah
Valentine Yapi-Gnaore
Issaka A K Youssao
Chih-Feng Chen
Marie-Hélène Pinard-van der Laan
Michèle Tixier-Boichard
Bertrand Bed'hom
AgroParisTech · FRGénétique Animale et Biologie Intégrative · FRUniversity of Ghana · GHAcademia Sinica · TWCentre National de Recherche Agronomique · CIInstitut Agronomique et Vétérinaire Hassan II · MAInstitut de Recherche Agricole pour le Développement · CMNational Chung Hsing University · TWUniversité d'Abomey-Calavi · BJUniversité Félix Houphouët-Boigny · CIUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The chicken major histocompatibility complex (MHC) is located on the microchromosome 16 and is described as the most variable region in the genome. The genes of the MHC play a central role in the immune system. Particularly, genes encoding proteins involved in the antigen presentation to T cells. Therefore, describing the genetic polymorphism of this region is crucial in understanding host-pathogen interactions. The tandem repeat LEI0258 is located within the core area of the B region of the chicken MHC (MHC-B region) and its genotypes correlate with serology. This marker was used to provide a picture of the worldwide diversity of the chicken MHC-B region and to categorize chicken MHC haplotypes. More than 1,600 animals from 80 different populations or lines of chickens from Africa, Asia, and Europe, including wild fowl species, were genotyped at the LEI0258 locus. Fifty novel alleles were described after sequencing. The resulting 79 alleles were classified into 12 clusters, based on the SNPs and indels found within the sequences flanking the repeats. Furthermore, hypotheses were formulated on the evolutionary dynamics of the region. This study constitutes the largest variability report for the chicken MHC and establishes a framework for future diversity or association studies.

Indexed as

Tandem Repeat SequencesAllelesAnimalsChickensHaplotypesMajor Histocompatibility ComplexMyosin Heavy ChainsNonmuscle Myosin Type IIBPolymorphism, Single NucleotideMyosin Heavy ChainsNonmuscle Myosin Type IIBnonmuscle myosin type IIB heavy chain

Identifiers

PMID23529664
OpenAlexW1999704330

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.