Evidence map›Paper›PMID 23528454›Full record

ArticleGenomics, proteomics & bioinformatics2013

Mass spectrometry-based quantitative proteomic profiling of human pancreatic and hepatic stellate cell lines.

Joao A Paulo, Vivek Kadiyala, Peter A Banks, Darwin L Conwell, Hanno Steen

Open access · goldAbstract readComparative Study
In one paragraph

Article in Genomics, proteomics & bioinformatics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Frontiers in microbiology · 2020
    Article
  7. AAV9-Molecular therapy. Methods & clinical development · 2019
    Article
  8. Review
  9. Review
  10. Effect of octreotide on pancreatic fibrosis in rats with high-fat diet-induced obesity.International journal of clinical and experimental pathology · 2018
    Article
  11. Review
  12. Article
  13. Review
  14. Comparative Analysis of TwoFrontiers in microbiology · 2016
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Joao A PauloDepartment of Pathology, Boston Children's Hospital, Boston, MA 02115, USA. joao_paulo@post.harvard.edu
Vivek Kadiyala
Peter A Banks
Darwin L Conwell
Hanno Steen
Brigham and Women's Hospital · USBoston Children's Hospital · USHarvard University · US

Funding

STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAYNE I LENCER · 1986 to 2026
$32.4M
Pancreatic Fluid Proteomics in Alcohol Induced Chronic PancreatitisR21DK081703 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI CONWELL, DARWIN LEWIS · 2010 to 2011
$483k
Proteomics of Pancreatic Fluid and Urine in Chronic PancreatitisF32DK085835 · NIDDK · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2010 to 2012
$166k
NIDDK NIH HHS 1F32 DK085835-01A1NIDDK NIH HHS 1R21DK081703-01A2NIDDK NIH HHS 5P30 DK034854-24NIDDK NIH HHS F32 DK085835NIDDK NIH HHS P30 DK034854NIDDK NIH HHS R21 DK081703
6 · The paper itself

Abstract

The functions of the liver and the pancreas differ; however, chronic inflammation in both organs is associated with fibrosis. Evidence suggests that fibrosis in both organs is partially regulated by organ-specific stellate cells. We explore the proteome of human hepatic stellate cells (hHSC) and human pancreatic stellate cells (hPaSC) using mass spectrometry (MS)-based quantitative proteomics to investigate pathophysiologic mechanisms. Proteins were isolated from whole cell lysates of immortalized hHSC and hPaSC. These proteins were tryptically digested, labeled with tandem mass tags (TMT), fractionated by OFFGEL, and subjected to MS. Proteins significantly different in abundance (P<0.05) were classified via gene ontology (GO) analysis. We identified 1223 proteins and among them, 1222 proteins were quantifiable. Statistical analysis determined that 177 proteins were of higher abundance in hHSC, while 157 were of higher abundance in hPaSC. GO classification revealed that proteins of relatively higher abundance in hHSC were associated with protein production, while those of relatively higher abundance in hPaSC were involved in cell structure. Future studies using the methodologies established herein, but with further upstream fractionation and/or use of enhanced MS instrumentation will allow greater proteome coverage, achieving a comprehensive proteomic analysis of hHSC and hPaSC.

Indexed as

Mass SpectrometryProteomeCell LineHepatic Stellate CellsHumansPancreatic Stellate CellsTranscriptomeProteome

Identifiers

PMID23528454
PMCPMC4123426
OpenAlexW2032076493

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.