Evidence map›Paper›PMID 23527119›Full record

ArticlePloS one2013

Genetic polymorphisms at TIMP3 are associated with survival of adenocarcinoma of the gastroesophageal junction.

Morteza Bashash, Amil Shah, Greg Hislop, Martin Treml, Karla Bretherick, Rozmin Janoo-Gilani, Stephen Leach, Nhu Le, Chris Bajdik, Angela Brooks-Wilson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
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  8. Associations ofInternational journal of molecular sciences · 2020
    Article
  9. Article
  10. Article
  11. The genetic basis of Turner syndrome aortopathy.American journal of medical genetics. Part C, Seminars in medical genetics · 2019
    Article
  12. TIMP-3 as a therapeutic target for cancer.Therapeutic advances in medical oncology · 2019
    Review
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  14. Review
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  16. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Morteza BashashCancer Control Research Program, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.
Amil Shah
Greg Hislop
Martin Treml
Karla Bretherick
Rozmin Janoo-Gilani
Stephen Leach
Nhu Le
Chris Bajdik
Angela Brooks-Wilson
Canada's Michael Smith Genome Sciences Centre · CAUniversity of British Columbia · CABC Cancer Agency · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The poor survival of adenocarcinomas of the gastroesophageal junction (GEJ) makes them clinically important. Discovery of host genetic factors that affect outcome may guide more individualized treatment. This study tests whether constitutional genetic variants in matrix metalloproteinases (MMP) and tissue inhibitors of metalloproteinases (TIMP) genes are associated with outcome of GEJ adenocarcinoma. Single nucleotide polymorphisms (SNPs) at four TIMP (TIMP1-4) and three MMP genes (MMP2, MMP7 and MMP9) were genotyped in DNA samples from a prospective cohort of patients with primary adenocarcinoma of the GEJ admitted to the British Columbia Cancer Agency. Cox proportional hazards regression, with adjustment for patient, disease and treatment variables, was used to estimate the association of SNPs with survival. Genotypes for 85 samples and 48 SNPs were analyzed. Four SNPs across TIMP3, (rs130274, rs715572, rs1962223 and rs5754312) were associated with survival. Interaction analyses revealed that the survival associations with rs715572 and rs5754312 are specific and significant for 5FU+cisplatin treated patients. Sanger sequencing of the TIMP3 coding and promoter regions revealed an additional SNP, rs9862, also associated with survival. TIMP3 genetic variants are associated with survival and may be potentially useful in optimizing treatment strategies for individual patients.

Indexed as

Polymorphism, GeneticAdenocarcinomaAgedAged, 80 and overBase SequenceEsophageal NeoplasmsEsophagogastric JunctionFemaleGene OrderGenotypeHumansMaleMiddle AgedMolecular Sequence DataNeoplasm StagingPolymorphism, Single NucleotideTissue Inhibitor of Metalloproteinase-3

Identifiers

PMID23527119
PMCPMC3602604
OpenAlexW1989685181

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.