Evidence map›Paper›PMID 23527095›Full record

ArticlePloS one2013

Gene expression networks underlying ovarian development in wild largemouth bass (Micropterus salmoides).

Christopher J Martyniuk, Melinda S Prucha, Nicholas J Doperalski, Philipp Antczak, Kevin J Kroll, Francesco Falciani, David S Barber, Nancy D Denslow

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 60 citations in OpenAlex.

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  8. Ecotoxico-lipidomics: An emerging concept to understand chemical-metabolic relationships in comparative fish models.Comparative biochemistry and physiology. Part D, Genomics & proteomics · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Christopher J MartyniukDepartment of Physiological Sciences and Center for Environmental and Human Toxicology, University of Florida, Gainesville, Florida, United States of America.
Melinda S Prucha
Nicholas J Doperalski
Philipp Antczak
Kevin J Kroll
Francesco Falciani
David S Barber
Nancy D Denslow
University of Florida · USUniversity of Liverpool · GBUniversity of New Brunswick · CA

Funding

Molecular Mechanisms of Endocrine Disruption in BassR01ES015449 · NIEHS · UNIVERSITY OF FLORIDA · PI DENSLOW, NANCY D · 2006 to 2011
$1.4M
Organochlorine pesticide effects on neurotransmitter signalingK99ES016767 · NIEHS · UNIVERSITY OF FLORIDA · PI MARTYNIUK, CHRISTOPHER JOSEPH · 2009 to 2009
$47k
NIEHS NIH HHS K99 ES016767NIEHS NIH HHS R01 ES015449
6 · The paper itself

Abstract

backgroundOocyte maturation in fish involves numerous cell signaling cascades that are activated or inhibited during specific stages of oocyte development. The objectives of this study were to characterize molecular pathways and temporal gene expression patterns throughout a complete breeding cycle in wild female largemouth bass to improve understanding of the molecular sequence of events underlying oocyte maturation.

methodsTranscriptomic analysis was performed on eight morphologically diverse stages of the ovary, including primary and secondary stages of oocyte growth, ovulation, and atresia. Ovary histology, plasma vitellogenin, 17β-estradiol, and testosterone were also measured to correlate with gene networks.

resultsGlobal expression patterns revealed dramatic differences across ovarian development, with 552 and 2070 genes being differentially expressed during both ovulation and atresia respectively. Gene set enrichment analysis (GSEA) revealed that early primary stages of oocyte growth involved increases in expression of genes involved in pathways of B-cell and T-cell receptor-mediated signaling cascades and fibronectin regulation. These pathways as well as pathways that included adrenergic receptor signaling, sphingolipid metabolism and natural killer cell activation were down-regulated at ovulation. At atresia, down-regulated pathways included gap junction and actin cytoskeleton regulation, gonadotrope and mast cell activation, and vasopressin receptor signaling and up-regulated pathways included oxidative phosphorylation and reactive oxygen species metabolism. Expression targets for luteinizing hormone signaling were low during vitellogenesis but increased 150% at ovulation. Other networks found to play a significant role in oocyte maturation included those with genes regulated by members of the TGF-beta superfamily (activins, inhibins, bone morphogenic protein 7 and growth differentiation factor 9), neuregulin 1, retinoid X receptor, and nerve growth factor family.

conclusionsThis study offers novel insight into the gene networks underlying vitellogenesis, ovulation and atresia and generates new hypotheses about the cellular pathways regulating oocyte maturation.

Indexed as

Gene Expression Regulation, DevelopmentalGene Regulatory NetworksAnimalsBassbeta CateninCluster AnalysisComputational BiologyEstrogensFemaleGene Expression ProfilingIntegrin alpha5beta1MaleOogenesisOvaryReproductionSignal Transductionbeta CateninEstrogensIntegrin alpha5beta1Vitellogenins

Identifiers

PMID23527095
PMCPMC3604104
OpenAlexW2141833953

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.