Evidence map›Paper›PMID 23526173›Full record

ArticleApplied mathematics letters2013

Quantifying CFSE Label Decay in Flow Cytometry Data.

H T Banks, A Choi, T Huffman, J Nardini, L Poag, W C Thompson

Abstract read
In one paragraph

Article in Applied mathematics letters, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
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  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

H T BanksCenter for Research in Scientific Computation, Center for Quantitative Sciences in Biomedicine, North Carolina State University, Raleigh, NC.
A Choi
T Huffman
J Nardini
L Poag
W C Thompson

Funding

Mathematical and Statistical Modeling to Inform Design of HIV Clinical TrialsR01AI071915 · NIAID · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI BANKS, H. THOMAS · 2006 to 2012
$4.6M
NIAID NIH HHS R01 AI071915
6 · The paper itself

Abstract

We developed a series of models for the label decay in cell proliferation assays when the intracellular dye carboxyfluorescein succinimidyl ester (CFSE) is used as a staining agent. Data collected from two healthy patients were used to validate the models and to compare the models with the Akiake Information Criteria. The distinguishing features of multiple decay rates in the data are readily characterized and explained via time dependent decay models such as the logistic and Gompertz models.

Indexed as

Akiake Informationcarboxyfluorescein succinimidyl ester (CFSE)exponential decayGompertz growthinverse problemslogistic growthMichaelis-Menten kineticsordinary differential equation models

Identifiers

PMID23526173
PMCPMC3601764

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.