Evidence map›Paper›PMID 23525944›Full record

ArticleExtremophiles : life under extreme conditions2013

Thermococcus kodakarensis has two functional PCNA homologs but only one is required for viability.

Miao Pan, Thomas J Santangelo, Lubomíra Čuboňová, Zhuo Li, Harlette Metangmo, Jane Ladner, Jerard Hurwitz, John N Reeve, Zvi Kelman

Open access · greenAbstract read
In one paragraph

Article in Extremophiles : life under extreme conditions, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Genome Replication inFrontiers in microbiology · 2017
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Miao PanInstitute for Bioscience and Biotechnology Research, 9600 Gudelsky Drive, Rockville, MD 20850, USA.
Thomas J Santangelo
Lubomíra Čuboňová
Zhuo Li
Harlette Metangmo
Jane Ladner
Jerard Hurwitz
John N Reeve
Zvi Kelman
The Ohio State University · USAdvanced Bioscience Laboratories (United States) · USNational Institute of Standards and Technology · USInstitute for Bioscience and Biotechnology ResearchMemorial Sloan Kettering Cancer Center · US

Funding

HISTONES AND NUCLEOSOMES IN ARCHAEA (ARCHAEBACTERIA)R01GM053185 · NIGMS · OHIO STATE UNIVERSITY · PI REEVE, JOHN NEWTON · 1995 to 2007
$1.7M
Archaeal Transcription TerminationF32GM073336 · NIGMS · OHIO STATE UNIVERSITY · PI SANTANGELO, THOMAS JAMES · 2005 to 2007
$151k
CGH CDC HHS GH034559NIGMS NIH HHS F32 GM073336NIGMS NIH HHS GM073336NIGMS NIH HHS GM53185NIGMS NIH HHS R01 GM053185
6 · The paper itself

Abstract

Proliferating cell nuclear antigen (PCNA) monomers assemble to form a ring-shaped clamp complex that encircles duplex DNA. PCNA binding to other proteins tethers them to the DNA providing contacts and interactions for many other enzymes essential for DNA metabolic processes. Most eukarya and euryarchaea have only one PCNA homolog but Thermococcus kodakarensis uniquely has two, designated PCNA1 and PCNA2, encoded by TK0535 and TK0582, respectively. Here, we establish that both PCNA1 and PCNA2 form homotrimers that stimulate DNA synthesis by archaeal DNA polymerases B and D and ATP hydrolysis by the replication factor C complex. In exponentially growing cells, PCNA1 is abundant and present at an ~100-fold higher concentration than PCNA2 monomers. Deletion of TK0582 (PCNA2) had no detectable effects on viability or growth whereas repeated attempts to construct a T. kodakarensis strain with TK0535 (PCNA1) deleted were unsuccessful. The implications of these observations for PCNA1 function and the origin of the two PCNA-encoding genes in T. kodakarensis are discussed.

Indexed as

Archaeal ProteinsDNA ReplicationGene DeletionMicrobial ViabilityProliferating Cell Nuclear AntigenProtein MultimerizationThermococcusArchaeal ProteinsProliferating Cell Nuclear Antigen

Identifiers

PMID23525944
PMCPMC3743106
OpenAlexW2064034842

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.