Evidence map›Paper›PMID 23524536›Full record

ArticleNature structural & molecular biology2013

Staufen1 dimerizes through a conserved motif and a degenerate dsRNA-binding domain to promote mRNA decay.

Michael L Gleghorn, Chenguang Gong, Clara L Kielkopf, Lynne E Maquat

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
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  3. Review
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  7. ADAR Family Proteins: A Structural Review.Current issues in molecular biology · 2024
    Review
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  15. Short interspersed nuclear element (SINE)-mediated post-transcriptional effects on human and mouse gene expression: SINE-UP for active duty.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michael L GleghornDepartment of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, Rochester, New York, USA.
Chenguang Gong
Clara L Kielkopf
Lynne E Maquat
University of Rochester · US

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI CINGOLANI, GINO · 1985 to 2011
$23.8M
Virology/Immunology CoreP30AI078498 · NIAID · UNIVERSITY OF ROCHESTER · PI DEWHURST, STEPHEN · 2008 to 2018
$14.6M
Regulation of Normal and Defective Human GenesR01GM074593 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2006 to 2013
$3.1M
CANCER RESEARCH TRAINING-EXPERIMENTAL THERAPY MODELST32CA009363 · NCI · UNIVERSITY OF ROCHESTER · PI LAND, HARTMUT · 1985 to 2013
$2.9M
A shared macromolecular X-ray diffraction system in RochesterS10RR026501 · NCRR · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2010 to 2010
$478k
BIAcore T100 for research and drug discovery in RochesterS10RR027241 · NCRR · UNIVERSITY OF ROCHESTER · PI KIELKOPF, CLARA · 2010 to 2010
$365k
Structural characterization of RNA recognition during Staufen-mediated decayF32GM090479 · NIGMS · UNIVERSITY OF ROCHESTER · PI GLEGHORN, MICHAEL LEONARD · 2010 to 2011
$99k
NCI NIH HHS T32 CA009363NCI NIH HHS T32 CA09363NCRR NIH HHS 1S10 RR026501NCRR NIH HHS 1S10 RR027241NCRR NIH HHS P41 RR001209NCRR NIH HHS P41RR001209NCRR NIH HHS P41 RR001646NCRR NIH HHS RR-01646NCRR NIH HHS S10 RR026501NCRR NIH HHS S10 RR027241NIAID NIH HHS P30 AI078498NIGMS NIH HHS DMR-0225180NIGMS NIH HHS F32 GM090479NIGMS NIH HHS R01 GM074593
6 · The paper itself

Abstract

Staufen1 (STAU1)-mediated mRNA decay (SMD) degrades mammalian-cell mRNAs that bind the double-stranded RNA (dsRNA)-binding protein STAU1 in their 3' untranslated region. We report a new motif, which typifies STAU homologs from all vertebrate classes, that is responsible for human STAU1 (hSTAU1) homodimerization. Our crystal structure and mutagenesis analyses reveal that this motif, which we named the Staufen-swapping motif (SSM), and the dsRNA-binding domain 5 ('RBD'5) mediate protein dimerization: the two SSM α-helices of one molecule interact primarily through a hydrophobic patch with the two 'RBD'5 α-helices of a second molecule. 'RBD'5 adopts the canonical α-β-β-β-α fold of a functional RBD, but it lacks residues and features required to bind duplex RNA. In cells, SSM-mediated hSTAU1 dimerization increases the efficiency of SMD by augmenting hSTAU1 binding to the ATP-dependent RNA helicase hUPF1. Dimerization regulates keratinocyte-mediated wound healing and many other cellular processes.

Indexed as

Amino Acid SequenceConserved SequenceCrystallography, X-RayCytoskeletal ProteinsDimerizationHumansModels, MolecularMolecular Sequence DataProtein ConformationRNA-Binding ProteinsRNA, MessengerCytoskeletal ProteinsRNA-Binding ProteinsRNA, MessengerSTAU1 protein, human

Identifiers

PMID23524536
PMCPMC4096160
OpenAlexW2022012176

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.