Evidence map›Paper›PMID 23524389›Full record

ArticleViruses2013

Correlation of naturally occurring HIV-1 resistance to DEB025 with capsid amino acid polymorphisms.

Philippe A Gallay, Roger G Ptak, Michael D Bobardt, Jean-Maurice Dumont, Grégoire Vuagniaux, Brigitte Rosenwirth

Abstract read
In one paragraph

Article in Viruses, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Cyclophilin A: a key player for etiological agent infection.Applied microbiology and biotechnology · 2021
    Review
  4. Review
  5. Article
  6. Article
  7. The role of immunophilins in viral infection.Biochimica et biophysica acta · 2015
    Article
  8. HIV-1 gag: an emerging target for antiretroviral therapy.Current topics in microbiology and immunology · 2015
    Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Philippe A GallayDepartment of Immunology & Microbial Science, The Scripps Research Institute, La Jolla 92037, California, USA. gallay@scripps.edu
Roger G Ptak
Michael D Bobardt
Jean-Maurice Dumont
Grégoire Vuagniaux
Brigitte Rosenwirth

Funding

C5a as an Anti-HIV Microbicidal CandidateR01AI087470 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI GALLAY, PHILIPPE ANDRE · 2010 to 2014
$2.3M
NIAID NIH HHS AI087470NIAID NIH HHS R01 AI087470
6 · The paper itself

Abstract

DEB025 (alisporivir) is a synthetic cyclosporine with inhibitory activity against human immunodeficiency virus type-1 (HIV-1) and hepatitis C virus (HCV). It binds to cyclophilin A (CypA) and blocks essential functions of CypA in the viral replication cycles of both viruses. DEB025 inhibits clinical HIV-1 isolates in vitro and decreases HIV-1 virus load in the majority of patients. HIV-1 isolates being naturally resistant to DEB025 have been detected in vitro and in nonresponder patients. By sequence analysis of their capsid protein (CA) region, two amino acid polymorphisms that correlated with DEB025 resistance were identified: H87Q and I91N, both located in the CypA-binding loop of the CA protein of HIV-1. The H87Q change was by far more abundant than I91N. Additional polymorphisms in the CypA-binding loop (positions 86, 91 and 96), as well as in the N-terminal loop of CA were detected in resistant isolates and are assumed to contribute to the degree of resistance. These amino acid changes may modulate the conformation of the CypA-binding loop of CA in such a way that binding and/or isomerase function of CypA are no longer necessary for virus replication. The resistant HIV-1 isolates thus are CypA-independent.

Indexed as

Drug Resistance, ViralPolymorphism, GeneticAmino Acid SequenceAnti-HIV AgentsCapsidCapsid ProteinsCyclosporineHIV-1HIV InfectionsHumansMolecular Sequence DataMutation, MissensealisporivirAnti-HIV AgentsCapsid ProteinsCyclosporine

Identifiers

PMID23524389
PMCPMC3705307

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.