Evidence map›Paper›PMID 23524372›Full record

ArticleMicrobes and environments2013

Candidatus Methanogranum caenicola: a novel methanogen from the anaerobic digested sludge, and proposal of Methanomassiliicoccaceae fam. nov. and Methanomassiliicoccales ord. nov., for a methanogenic lineage of the class Thermoplasmata.

Takao Iino, Hideyuki Tamaki, Satoshi Tamazawa, Yoshiyuki Ueno, Moriya Ohkuma, Ken-Ichiro Suzuki, Yasuo Igarashi, Shin Haruta

Open access · bronzeAbstract read
In one paragraph

Article in Microbes and environments, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
23.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 209 citations in OpenAlex.

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  9. Microorganisms · 2023
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  14. Ecology of Methanonatronarchaeia.Environmental microbiology · 2022
    Article
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  17. Glucogenic and lipogenic diets affectFrontiers in microbiology · 2022
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  18. Article
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  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 1 country.

Takao IinoJapan Collection of Microorganisms, RIKEN BioResource Center, 3–1–1 Koyadai, Tsukuba, Ibaraki 305–0074, Japan. iino@jcm.riken.jp
Hideyuki Tamaki
Satoshi Tamazawa
Yoshiyuki Ueno
Moriya Ohkuma
Ken-Ichiro Suzuki
Yasuo Igarashi
Shin Haruta
RIKEN BioResource Research Center · JPKajima Corporation (Japan) · JPNational Institute of Advanced Industrial Science and Technology · JPNational Institute of Technology and Evaluation · JPThe University of Tokyo · JPTokyo Metropolitan University · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The class Thermoplasmata harbors huge uncultured archaeal lineages at the order level, so-called Groups E2 and E3. A novel archaeon Kjm51a affiliated with Group E2 was enriched from anaerobic sludge in the present study. Clone library analysis of the archaeal 16S rRNA and mcrA genes confirmed a unique archaeal population in the enrichment culture. The 16S rRNA gene-based phylogeny revealed that the enriched archaeon Kjm51a formed a distinct cluster within Group E2 in the class Thermoplasmata together with Methanomassiliicoccus luminyensis B10(T) and environmental clone sequences derived from anaerobic digesters, bovine rumen, and landfill leachate. Archaeon Kjm51a showed 87.7% 16S rRNA gene sequence identity to the closest cultured species, M. luminyensis B10(T), indicating that archaeon Kjm51a might be phylogenetically novel at least at the genus level. In fluorescence in situ hybridization analysis, archaeon Kjm51a was observed as coccoid cells completely corresponding to the archaeal cells detected, although bacterial rod cells still coexisted. The growth of archaeon Kjm51a was dependent on the presence of methanol and yeast extract, and hydrogen and methane were produced in the enrichment culture. The addition of 2-bromo ethanesulfonate to the enrichment culture completely inhibited methane production and increased hydrogen concentration, which suggested that archaeon Kjm51a is a methanol-reducing hydrogenotrophic methanogen. Taken together, we propose the provisional taxonomic assignment, named Candidatus Methanogranum caenicola, for the enriched archaeon Kjm51a belonging to Group E2. We also propose to place the methanogenic lineage of the class Thermoplasmata in a novel order, Methanomassiliicoccales ord. nov.

Indexed as

AnaerobiosisCluster AnalysisDNA, ArchaealDNA, RibosomalEuryarchaeotaMethaneMolecular Sequence DataPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNASewageDNA, ArchaealDNA, RibosomalMethaneRNA, Ribosomal, 16SSewage

Identifiers

PMID23524372
PMCPMC4070666
OpenAlexW2141784520

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.