Evidence map›Paper›PMID 23520050›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Atomic structure of the 75 MDa extremophile Sulfolobus turreted icosahedral virus determined by CryoEM and X-ray crystallography.

David Veesler, Thiam-Seng Ng, Anoop K Sendamarai, Brian J Eilers, C Martin Lawrence, Shee-Mei Lok, Mark J Young, John E Johnson, Chi-yu Fu

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
  2. ICTV Virus Taxonomy Profile:The Journal of general virology · 2024
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Viruses of theFrontiers in microbiology · 2023
    Review
  8. Article
  9. Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Review
  11. Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Article
  13. Global Organization and Proposed Megataxonomy of the Virus World.Microbiology and molecular biology reviews : MMBR · 2020
    Review
  14. Article
  15. A packing for A-form DNA in an icosahedral virus.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

David VeeslerDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA.
Thiam-Seng Ng
Anoop K Sendamarai
Brian J Eilers
C Martin Lawrence
Shee-Mei Lok
Mark J Young
John E Johnson
Chi-yu Fu
Montana State University · USScripps Research Institute · USNational University of Singapore · SG

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI KIEFT, JEFFREY S · 2012 to 2021
$14.7M
WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
Studies of large and small-scale virus capsid dynamicsR01GM054076 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, JOHN EMIL · 1995 to 2014
$6.2M
Structural Characterization of Archaeal Virus Assembly and Host InteractionsK99GM098393 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI FU, CHI-YU · 2011 to 2012
$176k
NCRR NIH HHS 2P41RR017573-11NCRR NIH HHS P41 RR017573NIGMS NIH HHS 9 P41 GM103310-11NIGMS NIH HHS K99 GM098393NIGMS NIH HHS K99GM098393NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM054076NIGMS NIH HHS R01GM54076
6 · The paper itself

Abstract

Sulfolobus turreted icosahedral virus (STIV) was isolated in acidic hot springs where it infects the archeon Sulfolobus solfataricus. We determined the STIV structure using near-atomic resolution electron microscopy and X-ray crystallography allowing tracing of structural polypeptide chains and visualization of transmembrane proteins embedded in the viral membrane. We propose that the vertex complexes orchestrate virion assembly by coordinating interactions of the membrane and various protein components involved. STIV shares the same coat subunit and penton base protein folds as some eukaryotic and bacterial viruses, suggesting that they derive from a common ancestor predating the divergence of the three kingdoms of life. One architectural motif (β-jelly roll fold) forms virtually the entire capsid (distributed in three different gene products), indicating that a single ancestral protein module may have been at the origin of its evolution.

Indexed as

Models, MolecularCryoelectron MicroscopyCrystallography, X-RayMembrane ProteinsRudiviridaeSulfolobusMembrane Proteins

Identifiers

PMID23520050
PMCPMC3619359
OpenAlexW2005092172

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.