Evidence map›Paper›PMID 23519666›Full record

ArticleActa crystallographica. Section D, Biological crystallography2013

Structural characterization of V57D and V57P mutants of human cystatin C, an amyloidogenic protein.

Marta Orlikowska, Aneta Szymańska, Dominika Borek, Zbyszek Otwinowski, Piotr Skowron, Elżbieta Jankowska

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  5. Amino-acid composition after loop deletion drives domain swapping.Protein science : a publication of the Protein Society · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Marta OrlikowskaDepartment of Medicinal Chemistry, Faculty of Chemistry, University of Gdansk, Gdansk, Poland.
Aneta Szymańska
Dominika Borek
Zbyszek Otwinowski
Piotr Skowron
Elżbieta Jankowska
University of Gdańsk · PLThe University of Texas Southwestern Medical Center · US

Funding

X-RAY CRYSTALLOGRAPHY OF MACROMOLECULESR01GM053163 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MINOR, WLADEK, OTWINOWSKI, ZBYSZEK · 1996 to 2014
$6.3M
NIGMS NIH HHS R01 GM053163
6 · The paper itself

Abstract

Wild-type human cystatin C (hCC wt) is a low-molecular-mass protein (120 amino-acid residues, 13,343 Da) that is found in all nucleated cells. Physiologically, it functions as a potent regulator of cysteine protease activity. While the biologically active hCC wt is a monomeric protein, all crystallization efforts to date have resulted in a three-dimensional domain-swapped dimeric structure. In the recently published structure of a mutated hCC, the monomeric fold was preserved by a stabilization of the conformationally constrained loop L1 caused by a single amino-acid substitution: Val57Asn. Additional hCC mutants were obtained in order to elucidate the relationship between the stability of the L1 loop and the propensity of human cystatin C to dimerize. In one mutant Val57 was substituted by an aspartic acid residue, which is favoured in β-turns, and in the second mutant proline, a residue known for broadening turns, was substituted for the same Val57. Here, 2.26 and 3.0 Å resolution crystal structures of the V57D andV57P mutants of hCC are reported and their dimeric architecture is discussed in terms of the stabilization and destabilization effects of the introduced mutations.

Indexed as

Amino Acid SubstitutionAmyloidogenic ProteinsAspartic AcidCrystallography, X-RayCystatin CHumansMutagenesis, Site-DirectedProlineProtein ConformationProtein FoldingProtein MultimerizationValineAmyloidogenic ProteinsAspartic AcidCystatin CProlineValineamyloidcysteine protease inhibitorshuman cystatin Csingle-point mutations

Identifiers

PMID23519666
PMCPMC3976269
OpenAlexW2048517462

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.