Evidence map›Paper›PMID 23519468›Full record

ArticleThe Journal of biological chemistry2013

Mechanism of an ATP-independent protein disaggregase: II. distinct molecular interactions drive multiple steps during aggregate disassembly.

Peera Jaru-Ampornpan, Fu-Cheng Liang, Alex Nisthal, Thang X Nguyen, Pengcheng Wang, Kuang Shen, Steven L Mayo, Shu-Ou Shan

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. An ankyrin repeat chaperone targets toxic oligomers during amyloidogenesis.Protein science : a publication of the Protein Society · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Chloroplast SRP43 acts as a chaperone for glutamyl-tRNA reductase, the rate-limiting enzyme in tetrapyrrole biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Designer protein disaggregases to counter neurodegenerative disease.Current opinion in genetics & development · 2017
    Review
  13. Conformational dynamics of a membrane protein chaperone enables spatially regulated substrate capture and release.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Peera Jaru-AmpornpanFrom the Division of Chemistry and Chemical Engineering and.
Fu-Cheng Liang
Alex Nisthal
Thang X Nguyen
Pengcheng Wang
Kuang Shen
Steven L Mayo
Shu-Ou Shan

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability of molecular chaperones to overcome the misfolding and aggregation of proteins is essential for the maintenance of proper protein homeostasis in all cells. Thus far, the best studied disaggregase systems are the Clp/Hsp100 family of "ATPases associated with various cellular activities" (AAA(+)) ATPases, which use mechanical forces powered by ATP hydrolysis to remodel protein aggregates. An alternative system to disassemble large protein aggregates is provided by the 38-kDa subunit of the chloroplast signal recognition particle (cpSRP43), which uses binding energy with its substrate proteins to drive disaggregation. The mechanism of this novel chaperone remains unclear. Here, molecular genetics and structure-activity analyses show that the action of cpSRP43 can be dissected into two steps with distinct molecular requirements: (i) initial recognition, during which cpSRP43 binds specifically to a recognition motif displayed on the surface of the aggregate; and (ii) aggregate remodeling, during which highly adaptable binding interactions of cpSRP43 with hydrophobic transmembrane domains of the substrate protein compete with the packing interactions within the aggregate. This establishes a useful framework to understand the molecular mechanism by which binding interactions from a molecular chaperone can be used to overcome protein aggregates in the absence of external energy input from ATP.

Indexed as

ArabidopsisAmino Acid SequenceArabidopsis ProteinsFluorescence PolarizationHydrophobic and Hydrophilic InteractionsKineticsLight-Harvesting Protein ComplexesModels, MolecularMolecular ChaperonesMolecular Sequence DataProtein BindingProtein Interaction Domains and MotifsProtein MultimerizationProtein StabilityProtein Structure, QuaternaryProtein SubunitsArabidopsis ProteinscpSRP43 protein, ArabidopsisLight-Harvesting Protein ComplexesMolecular ChaperonesProtein SubunitsSignal Recognition ParticleATP-independent DisaggregaseEnzyme MechanismsKineticsMembrane ProteinsMolecular ChaperoneMutagenesis MechanismsProtein AggregationProtein BiogenesisSignal Recognition Particle

Identifiers

PMID23519468
PMCPMC3650381

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.