Evidence map›Paper›PMID 23517441›Full record

ArticleMolecular microbiology2013

Missense substitutions reflecting regulatory control of transmitter phosphatase activity in two-component signalling.

TuAnh Ngoc Huynh, Chris E Noriega, Valley Stewart

Abstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Conformational dynamics of the essential sensor histidine kinase WalK.Acta crystallographica. Section D, Structural biology · 2017
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

TuAnh Ngoc HuynhFood Science Graduate Group, University of California, Davis, CA, USA.
Chris E Noriega
Valley Stewart
University of California, Davis · US

Funding

GENETIC CONTROL OF NITRATE RESPIRATION IN E. COLIR01GM036877 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI STEWART, VALLEY J. · 1986 to 2010
$2.4M
NIGMS NIH HHS GM036877NIGMS NIH HHS R01 GM036877
6 · The paper itself

Abstract

Negative control in two-component signal transduction results from sensor transmitter phosphatase activity for phospho-receiver dephosphorylation. A hypothetical mechanism for this reaction involves a catalytic residue in the H-box active-site region. However, a complete understanding of transmitter phosphatase regulation is hampered by the abundance of kinase-competent, phosphatase-defective missense substitutions (K(+) P(-) phenotype) outside of the active-site region. For the Escherichia coli NarX sensor, a model for the HisKA_3 sequence family, DHp domain K(+) P(-) mutants defined two classes. Interaction mutants mapped to the active site-distal base of the DHp helix 1, whereas conformation mutants were affected in the X-box region of helix 2. Thus, different types of perturbations can influence transmitter phosphatase activity indirectly. By comparison, K(+) P(-) substitutions in the HisKA sensors EnvZ and NtrB additionally map to a third region, at the active site-proximal top of the DHp helix 1, independently identified as important for DHp-CA domain interaction in this sensor class. Moreover, the NarX transmitter phosphatase activity was independent of nucleotides, in contrast to the activity for many HisKA family sensors. Therefore, distinctions involving both the DHp and the CA domains suggest functional diversity in the regulation of HisKA and HisKA_3 transmitter phosphatase activities.

Indexed as

Gene Expression Regulation, BacterialMutation, MissenseSignal TransductionAllelesAmino Acid SequenceBacterial Outer Membrane ProteinsEscherichia coliEscherichia coli ProteinsGenotypeMolecular Sequence DataMultienzyme ComplexesPhenotypePhosphoprotein PhosphatasesPhosphoric Monoester HydrolasesPolynucleotide AdenylyltransferaseProtein KinasesBacterial Outer Membrane ProteinsenvZ protein, E coliEscherichia coli ProteinsglnL protein, E coliMultienzyme ComplexesnarX protein, E colipcnB protein, E coliPhosphoprotein PhosphatasesPhosphoric Monoester HydrolasesPolynucleotide AdenylyltransferaseProtein Kinases

Identifiers

PMID23517441
PMCPMC3633741
OpenAlexW1502150987

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.