Evidence map›Paper›PMID 23516392›Full record

ArticlePloS one2013

The mitochondrion-like organelle of Trimastix pyriformis contains the complete glycine cleavage system.

Zuzana Zubáčová, Lukáš Novák, Jitka Bublíková, Vojtěch Vacek, Jan Fousek, Jakub Rídl, Jan Tachezy, Pavel Doležal, Cestmír Vlček, Vladimír Hampl

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  8. Article
  9. Fe-S Cluster Assembly in Oxymonads and Related Protists.Molecular biology and evolution · 2018
    Article
  10. Organelles that illuminate the origins ofNature ecology & evolution · 2017
    Article
  11. Article
  12. The curious case of vanishing mitochondria.Microbial cell (Graz, Austria) · 2016
    Article
  13. Article
  14. Diversity and origins of anaerobic metabolism in mitochondria and related organelles.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Zuzana ZubáčováCharles University in Prague, Faculty of Science, Department of Parasitology, Prague, Czech Republic.
Lukáš Novák
Jitka Bublíková
Vojtěch Vacek
Jan Fousek
Jakub Rídl
Jan Tachezy
Pavel Doležal
Cestmír Vlček
Vladimír Hampl
Charles University · CZCzech Academy of Sciences, Institute of Molecular Genetics · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

All eukaryotic organisms contain mitochondria or organelles that evolved from the same endosymbiotic event like classical mitochondria. Organisms inhabiting low oxygen environments often contain mitochondrial derivates known as hydrogenosomes, mitosomes or neutrally as mitochondrion-like organelles. The detailed investigation has shown unexpected evolutionary plasticity in the biochemistry and protein composition of these organelles in various protists. We investigated the mitochondrion-like organelle in Trimastix pyriformis, a free-living member of one of the three lineages of anaerobic group Metamonada. Using 454 sequencing we have obtained 7 037 contigs from its transcriptome and on the basis of sequence homology and presence of N-terminal extensions we have selected contigs coding for proteins that putatively function in the organelle. Together with the results of a previous transcriptome survey, the list now consists of 23 proteins - mostly enzymes involved in amino acid metabolism, transporters and maturases of proteins and transporters of metabolites. We have no evidence of the production of ATP in the mitochondrion-like organelle of Trimastix but we have obtained experimental evidence for the presence of enzymes of the glycine cleavage system (GCS), which is part of amino acid metabolism. Using homologous antibody we have shown that H-protein of GCS localizes into vesicles in the cell of Trimastix. When overexpressed in yeast, H- and P-protein of GCS and cpn60 were transported into mitochondrion. In case of H-protein we have demonstrated that the first 16 amino acids are necessary for this transport. Glycine cleavage system is at the moment the only experimentally localized pathway in the mitochondrial derivate of Trimastix pyriformis.

Indexed as

Amino Acid OxidoreductasesCarrier ProteinsEukaryotaGene ExpressionGlycine Decarboxylase Complex H-ProteinMitochondriaMitochondrial ProteinsMultienzyme ComplexesOrganellesSaccharomyces cerevisiaeTransferasesAmino Acid OxidoreductasesCarrier Proteinsglycine cleavage systemGlycine Decarboxylase Complex H-ProteinMitochondrial ProteinsMultienzyme ComplexesTransferases

Identifiers

PMID23516392
PMCPMC3596361
OpenAlexW1990569479

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.