Evidence map›Paper›PMID 23516108›Full record

ArticleOpen biology2013

Bigenomic transcriptional regulation of all thirteen cytochrome c oxidase subunit genes by specificity protein 1.

Shilpa S Dhar, Kaid Johar, Margaret T T Wong-Riley

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Chromatin Hubs: A biological and computational outlook.Computational and structural biotechnology journal · 2022
    Review
  5. Article
  6. CytochromeFrontiers in physiology · 2019
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Shilpa S DharDepartment of Cell Biology, Neurobiology and Anatomy, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Kaid Johar
Margaret T T Wong-Riley
Medical College of Wisconsin · US

Funding

Neurochemical and Metabolic Regulation in the Visual CortexR01EY018441 · NEI · MEDICAL COLLEGE OF WISCONSIN · PI WONG-RILEY, MARGARET TT · 2007 to 2013
$2.4M
NEI NIH HHS R01 EY018441
6 · The paper itself

Abstract

Cytochrome c oxidase (COX) is one of only four known bigenomic proteins, with three mitochondria-encoded subunits and 10 nucleus-encoded ones derived from nine different chromosomes. The mechanism of regulating this multi-subunit, bigenomic enzyme is not fully understood. We hypothesize that specificity protein 1 (Sp1) functionally regulates the 10 nucleus-encoded COX subunit genes directly and the three mitochondrial COX subunit genes indirectly by regulating mitochondrial transcription factors A and B (TFAM, TFB1M and TFB2M) in neurons. By means of in silico analysis, electrophoretic mobility shift and supershift assays, chromatin immunoprecipitation, RNA interference and over-expression experiments, the present study documents that Sp1 is a critical regulator of all 13 COX subunit genes in neurons. This regulation is intimately associated with neuronal activity. Silencing of Sp1 prevented the upregulation of all COX subunits by KCl, and over-expressing Sp1 rescued all COX subunits from being downregulated by tetrodotoxin. Thus, Sp1 and our previously described nuclear respiratory factors 1 and 2 are the three key regulators of all 13 COX subunit genes in neurons. The binding sites for Sp1 on all 10 nucleus-encoded COX subunits, TFAM, TFB1M and TFB2M are highly conserved among mice, rats and humans.

Indexed as

AnimalsBase SequenceBinding SitesCell NucleusDown-RegulationElectron Transport Complex IVElectrophoretic Mobility Shift AssayHumansMiceMitochondriaNeuronsPotassium ChloridePromoter Regions, GeneticProtein SubunitsRatsRNA InterferenceElectron Transport Complex IVPotassium ChlorideProtein SubunitsRNA, Small InterferingSp1 Transcription FactorTetrodotoxinTranscription Factors

Identifiers

PMID23516108
PMCPMC3718336
OpenAlexW2123244079

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.