Evidence map›Paper›PMID 23514422›Full record

ArticleJournal of proteome research2013

PPE38 of Mycobacterium marinum triggers the cross-talk of multiple pathways involved in the host response, as revealed by subcellular quantitative proteomics.

Hui Wang, Dandan Dong, Siwei Tang, Xian Chen, Qian Gao

Open access · bronzeAbstract read
In one paragraph

Article in Journal of proteome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. The PE/PPE family proteins ofFrontiers in immunology · 2025
    Review
  3. Article
  4. PPE38-Secretion-Dependent Proteins ofFrontiers in immunology · 2021
    Article
  5. Proteomics ofFrontiers in immunology · 2018
    Review
  6. PPE38 Protein ofFrontiers in cellular and infection microbiology · 2017
    Article
  7. Review
  8. Article
  9. Article
  10. Thiol peroxiredoxin, a novel allergen fromAmerican journal of translational research · 2016
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Hui WangKey Laboratory of Medical Molecular Virology, Institute of Biomedical Sciences and Institute of Medical Microbiology, Shanghai Medical College, Fudan University, Shanghai 200032, China.
Dandan Dong
Siwei Tang
Xian Chen
Qian Gao
Fudan University · CNShanghai Medical College of Fudan University · CN

Funding

Investigation of Systems Regulation in TLR SignalingR01AI064806 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CHEN, XIAN · 2006 to 2010
$1.6M
NIAID NIH HHS R01 AI064806
6 · The paper itself

Abstract

The PE/PPE family of proteins which are in high abundance in pathogenic species such as Mycobacterium tuberculosis and M. marinum , play the critical role in generating antigenic variation and evasion of host immune responses. However, little is known about their functional roles in mycobacterial pathogenesis. Previously, we found that PPE38 is associated with the virulence of mycobacteria, presumably by modulating the host immune response. To clarify the link between PPE38 and host response, we employed a subcellular, amino acid-coded mass tagging (AACT)/SILAC-based quantitative proteomic approach to determine the proteome changes during host response to M. marinum PPE38. As a result, 291 or 290 proteins were found respectively to be up- or down-regulated in the nucleus. Meanwhile, 576 upregulated and 272 downregulated proteins were respectively detected in the cytosol. The data of quantitative proteomic changes and concurrent biological validations revealed that M. marinum PPE38 could trigger extensive inflammatory responses in macrophages, probably through interacting with toll-like receptor 2 (TLR2). We also found that PPE38 may arrest MHC-1 processing and presentation in infected macrophages. Using bioinformatics tools to analyze global changes in the host proteome, we obtained a PPE38-respondor network involved in various transcriptional factors (TFs) and TF-associated proteins. The results of our systems investigation now indicate that there is cross-talk involving a broad range of diverse biological pathways/processes that coordinate the host response to M. marinum PPE38.

Indexed as

AnimalsAntigen PresentationAntigens, BacterialBacterial ProteinsCell LineCell NucleusCluster AnalysisCytokinesGene Expression RegulationHost-Pathogen InteractionsMacrophagesMiceMycobacterium marinumProteomeProteomicsReceptor Cross-TalkAntigens, BacterialBacterial ProteinsCytokinesProteomeTlr2 protein, mouseToll-Like Receptor 2Transcription Factors

Identifiers

PMID23514422
PMCPMC3646403
OpenAlexW2040258241

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.