Evidence map›Paper›PMID 23514039›Full record

ArticleProtein and peptide letters2013

SHP family protein tyrosine phosphatases adopt canonical active-site conformations in the apo and phosphate-bound states.

Nilda L Alicea-Velazquez, Titus J Boggon

Abstract read
In one paragraph

Article in Protein and peptide letters, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Nilda L Alicea-VelazquezDepartment of Pharmacology, Yale University School of Medicine, 333 Cedar St., SHM B-316A, New Haven, CT 06520, USA.
Titus J Boggon
Yale University · US

Funding

Structural basis of Jak3-mediated interleukin-2 family signal transductionR01AI075133 · NIAID · YALE UNIVERSITY · PI BOGGON, TITUS JONATHON · 2007 to 2011
$2.2M
NIAID NIH HHS R01 AI075133NIAID NIH HHS R01 AI075133-S1
6 · The paper itself

Abstract

Protein tyrosine phosphatase (PTP) catalytic domains undergo a series of conformational changes in order to mediate dephosphorylation of their tyrosine phosphorylated substrates. An important conformational change occurs in the Tryptophan-Proline-Aspartic acid (WPD) loop, which contains the conserved catalytic aspartate. Upon substrate binding, the WPD loop transitions from the 'open' to the 'closed' state, thus allowing optimal positioning of the catalytic aspartate for substrate dephosphorylation. The dynamics of WPD loop conformational changes have previously been studied for PTP1B, HePTP, and the bacterial phosphatase YopH, but have not yet been comprehensively studied for the nonreceptor tyrosine phosphatase SHP-1 (PTPN6). To structurally describe the changes in WPD loop conformation in SHP-1, we have determined the 1.4 Å crystal structure of the catalytic domain of SHP-1 in the Apo state and the 1.8 Å crystal structure of the SHP-1 catalytic domain in complex with a phosphate ion. We provide structural analysis for the WPD loop closed state of SHP phosphatases and the conformational changes that occur upon WPD loop closure.

Indexed as

ApoenzymesCatalytic DomainCrystallizationHumansHydrogen BondingModels, MolecularPhosphorylationProtein BindingProtein ConformationProtein Tyrosine Phosphatase, Non-Receptor Type 6Recombinant ProteinsApoenzymesProtein Tyrosine Phosphatase, Non-Receptor Type 6PTPN6 protein, humanRecombinant Proteins

Identifiers

PMID23514039
PMCPMC3777556
OpenAlexW2054312062

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.