Evidence map›Paper›PMID 23511973›Full record

ArticleThe EMBO journal2013

The rough endoplasmatic reticulum is a central nucleation site of siRNA-mediated RNA silencing.

Lukas Stalder, Wolf Heusermann, Lena Sokol, Dominic Trojer, Joel Wirz, Justin Hean, Anja Fritzsche, Florian Aeschimann, Vera Pfanzagl, Pascal Basselet and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 226 citations in OpenAlex.

  1. Article
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  8. Molecular therapy. Nucleic acids · 2024
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  12. StaufenC facilitates utilization of the ERAD pathway to transport dsRNA through the endoplasmic reticulum to the cytosol.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  15. Review
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  18. Next-Cell Hypothesis: Mechanism of Obesity-Associated Carcinogenesis.Advances in experimental medicine and biology · 2024
    Review
  19. Article
  20. Review

81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Lukas StalderNovartis Institutes for Biomedical Research, NIBR Biologics Center, RNAi Therapeutics, Basel 4000, Switzerland. lukas.stalder@sakk.ch
Wolf Heusermann
Lena Sokol
Dominic Trojer
Joel Wirz
Justin Hean
Anja Fritzsche
Florian Aeschimann
Vera Pfanzagl
Pascal Basselet
Jan Weiler
Martin Hintersteiner
David V Morrissey
Nicole C Meisner-Kober
Novartis (Switzerland) · CHNovartis Institutes for BioMedical Research

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite progress in mechanistic understanding of the RNA interference (RNAi) pathways, the subcellular sites of RNA silencing remain under debate. Here we show that loading of lipid-transfected siRNAs and endogenous microRNAs (miRNA) into RISC (RNA-induced silencing complexes), encounter of the target mRNA, and Ago2-mediated mRNA slicing in mammalian cells are nucleated at the rough endoplasmic reticulum (rER). Although the major RNAi pathway proteins are found in most subcellular compartments, the miRNA- and siRNA-loaded Ago2 populations co-sediment almost exclusively with the rER membranes, together with the RISC loading complex (RLC) factors Dicer, TAR RNA binding protein (TRBP) and protein activator of the interferon-induced protein kinase (PACT). Fractionation and membrane co-immune precipitations further confirm that siRNA-loaded Ago2 physically associates with the cytosolic side of the rER membrane. Additionally, RLC-associated double-stranded siRNA, diagnostic of RISC loading, and RISC-mediated mRNA cleavage products exclusively co-sediment with rER. Finally, we identify TRBP and PACT as key factors anchoring RISC to ER membranes in an RNA-independent manner. Together, our findings demonstrate that the outer rER membrane is a central nucleation site of siRNA-mediated RNA silencing.

Indexed as

RNA InterferenceArgonaute ProteinsDEAD-box RNA HelicasesEndoplasmic ReticulumHeLa CellsHumansImmunoprecipitationRibonuclease IIIRNA-Binding ProteinsRNA, Small InterferingTrans-Activation Responsive RNA-Binding ProteinAGO2 protein, humanArgonaute ProteinsDEAD-box RNA HelicasesDICER1 protein, humanPRKRA protein, humanRibonuclease IIIRNA-Binding ProteinsRNA, Small InterferingTrans-Activation Responsive RNA-Binding Protein

Identifiers

PMID23511973
PMCPMC3630355
OpenAlexW2015790286

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.