Evidence map›Paper›PMID 23511850›Full record

ReviewSmall GTPases

Discovery of new Longin and Roadblock domains that form platforms for small GTPases in Ragulator and TRAPP-II.

Timothy P Levine, Rachel D Daniels, Louise H Wong, Alberto T Gatta, Andreas Gerondopoulos, Francis A Barr

Abstract readLetterReview
In one paragraph

Review in Small GTPases. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed.

  1. Article
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  9. Article
  10. Regulation of mTORC1 by the Rag GTPases.Biochemical Society transactions · 2023
    Review
  11. Review
  12. Review
  13. Article
  14. Structure of the Mon1-Ccz1 complex reveals molecular basis of membrane binding for Rab7 activation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. The progress inSmall GTPases · 2022
    Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Timothy P Levine
Rachel D Daniels
Louise H Wong
Alberto T Gatta
Andreas Gerondopoulos
Francis A Barr

Funding

Medical Research CouncilWellcome Trust 097769Wellcome Trust 097769/Z/11/Z
6 · The paper itself

Abstract

Guanine nucleotide exchange factors (GEFs) control the site and extent of GTPase activity. Longin domains (LDs) are found in many Rab-GEFs, including DENNs, MON1/CCZ1, BLOC-3 and the TRAPP complex. Other GEFs, including Ragulator, contain roadblock domains (RDs), the structure of which is closely related to LDs. Other GTPase regulators, including mglB, SRX and Rags, use LDs or RDs as platforms for GTPases. Here, we review the conserved relationship between GTPases and LD/RDs, showing how LD/RD dimers act as adaptable platforms for GTPases. To extend our knowledge of GEFs, we used a highly sensitive sequence alignment tool to predict the existence of new LD/RDs. We discovered two yeast Ragulator subunits, and also a new LD in TRAPPC10 that may explain the Rab11-GEF activity ascribed to TRAPP-II.

Indexed as

Amino Acid SequenceAnimalsGuanine Nucleotide Exchange FactorsHumansModels, MolecularMolecular Sequence DataMonomeric GTP-Binding ProteinsProtein Structure, TertiaryYeastsGuanine Nucleotide Exchange FactorsMonomeric GTP-Binding ProteinsC7orf59C9orf72DENNL72HBXIPHHpredNPRL2NPRL3Trs130pYCR075W-AYNR034W-A

Identifiers

PMID23511850
PMCPMC3747258

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.