Evidence map›Paper›PMID 23511633›Full record

ArticleThe Journal of biological chemistry2013

Two conserved arginine residues from the SK3 potassium channel outer vestibule control selectivity of recognition by scorpion toxins.

Jing Feng, Youtian Hu, Hong Yi, Shijin Yin, Song Han, Jun Hu, Zongyun Chen, Weishan Yang, Zhijian Cao, Michel De Waard and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. The dual role of SrbA from Paracoccidioides lutzii: a hypoxic regulator.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Jing FengState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Youtian Hu
Hong Yi
Shijin Yin
Song Han
Jun Hu
Zongyun Chen
Weishan Yang
Zhijian Cao
Michel De Waard
Jean-Marc Sabatier
Wenxin Li
Yingliang Wu
Wuhan University · CNAix-Marseille Université · FRUniversité Joseph Fourier · FR

Funding

Sensitivity to Intravenous Ethanol: Neuroimaging and Behavioral PhenotypesR21AA020304 · NIAAA · THE MIND RESEARCH NETWORK · PI CLAUS, ERIC D, HENDERSHOT, CHRISTIAN S · 2011 to 2012
$434k
NIAAA NIH HHS R21 AA020304
6 · The paper itself

Abstract

Potassium channel functions are often deciphered by using selective and potent scorpion toxins. Among these toxins, only a limited subset is capable of selectively blocking small conductance Ca(2+)-activated K(+) (SK) channels. The structural bases of this selective SK channel recognition remain unclear. In this work, we demonstrate the key role of the electric charges of two conserved arginine residues (Arg-485 and Arg-489) from the SK3 channel outer vestibule in the selective recognition by the SK3-blocking BmP05 toxin. Indeed, individually substituting these residues with histidyl or lysyl (maintaining the positive electric charge partially or fully), although decreasing BmP05 affinity, still preserved the toxin sensitivity profile of the SK3 channel (as evidenced by the lack of recognition by many other types of potassium channel-sensitive charybdotoxin). In contrast, when Arg-485 or Arg-489 of the SK3 channel was mutated to an acidic (Glu) or alcoholic (Ser) amino acid residue, the channel lost its sensitivity to BmP05 and became susceptible to the "new" blocking activity by charybdotoxin. In addition to these SK3 channel basic residues important for sensitivity, two acidic residues, Asp-492 and Asp-518, also located in the SK3 channel outer vestibule, were identified as being critical for toxin affinity. Furthermore, molecular modeling data indicate the existence of a compact SK3 channel turret conformation (like a peptide screener), where the basic rings of Arg-485 and Arg-489 are stabilized by strong ionic interactions with Asp-492 and Asp-518. In conclusion, the unique properties of Arg-485 and Arg-489 (spatial orientations and molecular interactions) in the SK3 channel account for its toxin sensitivity profile.

Indexed as

Models, MolecularArginineCharybdotoxinHEK293 CellsHumansScorpion VenomsSmall-Conductance Calcium-Activated Potassium ChannelsArginineBmP05 toxinCharybdotoxinKCNN3 protein, humanScorpion VenomsSmall-Conductance Calcium-Activated Potassium ChannelsIon ChannelsMolecular DockingMolecular ModelingPatch ClampPotassium ChannelsProtein/Protein InteractionsProtein StructureToxins

Identifiers

PMID23511633
PMCPMC3642302
OpenAlexW2016816104

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.