Evidence map›Paper›PMID 23511205›Full record

ArticleMolecular systems biology2013

A fluorescent reporter for mapping cellular protein-protein interactions in time and space.

Daniel Moreno, Joachim Neller, Hans A Kestler, Johann Kraus, Alexander Dünkler, Nils Johnsson

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Fast friends - Ubiquitin-like modifiers as engineered fusion partners.Seminars in cell & developmental biology · 2022
    Review
  3. Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Daniel MorenoDepartment of Biology, Institute of Molecular Genetics and Cell Biology, Ulm University, Ulm, Germany.
Joachim Neller
Hans A Kestler
Johann Kraus
Alexander Dünkler
Nils Johnsson
Universität Ulm · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We introduce a fluorescent reporter for monitoring protein-protein interactions in living cells. The method is based on the Split-Ubiquitin method and uses the ratio of two auto-fluorescent reporter proteins as signal for interaction (SPLIFF). The mating of two haploid yeast cells initiates the analysis and the interactions are followed online by two-channel time-lapse microscopy of the diploid cells during their first cell cycle. Using this approach we could with high spatio-temporal resolution visualize the differences between the interactions of the microtubule binding protein Stu2p with two of its binding partners, monitor the transient association of a Ran-GTPase with its receptors at the nuclear pore, and distinguish between protein interactions at the polar cortical domain at different phases of polar growth. These examples further demonstrate that protein-protein interactions identified from large-scale screens can be effectively followed up by high-resolution single-cell analysis.

Indexed as

Cell CycleCell NucleusFluorescent DyesMicroscopy, ConfocalMicrotubule-Associated ProteinsMicrotubulesNuclear ProteinsNucleosome Assembly Protein 1Protein Interaction MappingProtein KinasesRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSingle-Cell AnalysisTime-Lapse ImagingUbiquitinFluorescent DyesHOF1 protein, S cerevisiaeKAR9 protein, S cerevisiaeKCC4 protein, S cerevisiaeMicrotubule-Associated ProteinsNAP1 protein, S cerevisiaeNuclear ProteinsNucleosome Assembly Protein 1Protein KinasesRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSPC72 protein, S cerevisiaeSTU2 protein, S cerevisiaeUbiquitin

Identifiers

PMID23511205
PMCPMC3619943
OpenAlexW2113406918

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.