ArticlePlant signaling & behavior2013
Identification of new stress-induced microRNA and their targets in wheat using computational approach.
Article in Plant signaling & behavior, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Early changes in microRNA expression in Arabidopsis plants infected with the fungal pathogen Fusarium graminearum.PloS one · 2025Article
- Early changes in microRNA expression in Arabidopsis plants infected with the fungal pathogenbioRxiv : the preprint server for biology · 2024Article
- Genome-Wide Identification and Expression Profiling of the ABF Transcription Factor Family in Wheat (International journal of molecular sciences · 2024Article
- Differential expression profiling of microRNAs and their target genes during wheat-Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Drought Response in Rice: The miRNA Story.International journal of molecular sciences · 2019Review
- Identification and characterization of CircRNAs involved in the regulation of wheat root length.Biological research · 2019Article
- Long noncoding RNAs in the model species Brachypodium distachyon.Scientific reports · 2017Article
- Extrapolative microRNA precursor based SSR mining from tea EST database in respect to agronomic traits.BMC research notes · 2017Article
- Regulation of Isoflavone Biosynthesis by miRNAs in Two Contrasting Soybean Genotypes at Different Seed Developmental Stages.Frontiers in plant science · 2017Article
- Functional Roles of microRNAs in Agronomically Important Plants-Potential as Targets for Crop Improvement and Protection.Frontiers in plant science · 2017Review
- miRNA-based drought regulation in wheat.Functional & integrative genomics · 2016Article
- Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii.Frontiers in plant science · 2016Article
- De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway.BMC genomics · 2015Article
- Novel and conserved heat-responsive microRNAs in wheat (Triticum aestivum L.).Functional & integrative genomics · 2015Article
- An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress.BMC genomics · 2015Article
- Combined Small RNA and Degradome Sequencing Reveals Novel MiRNAs and Their Targets in the High-Yield Mutant Wheat Strain Yunong 3114.PloS one · 2015Article
- Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution.Frontiers in physiology · 2015Review
- Post-transcriptional and post-translational regulations of drought and heat response in plants: a spider's web of mechanisms.Frontiers in plant science · 2015Article
- Article
- Differential regulation of microRNAs in response to osmotic, salt and cold stresses in wheat.Molecular biology reports · 2014Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MicroRNAs (miRNAs) are a class of short endogenous non-coding small RNA molecules of about 18-22 nucleotides in length. Their main function is to downregulate gene expression in different manners like translational repression, mRNA cleavage and epigenetic modification. Computational predictions have raised the number of miRNAs in wheat significantly using an EST based approach. Hence, a combinatorial approach which is amalgamation of bioinformatics software and perl script was used to identify new miRNA to add to the growing database of wheat miRNA. Identification of miRNAs was initiated by mining the EST (Expressed Sequence Tags) database available at National Center for Biotechnology Information. In this investigation, 4677 mature microRNA sequences belonging to 50 miRNA families from different plant species were used to predict miRNA in wheat. A total of five abiotic stress-responsive new miRNAs were predicted and named Ta-miR5653, Ta-miR855, Ta-miR819k, Ta-miR3708 and Ta-miR5156. In addition, four previously identified miRNA, i.e., Ta-miR1122, miR1117, Ta-miR1134 and Ta-miR1133 were predicted in newly identified EST sequence and 14 potential target genes were subsequently predicted, most of which seems to encode ubiquitin carrier protein, serine/threonine protein kinase, 40S ribosomal protein, F-box/kelch-repeat protein, BTB/POZ domain-containing protein, transcription factors which are involved in growth, development, metabolism and stress response. Our result has increased the number of miRNAs in wheat, which should be useful for further investigation into the biological functions and evolution of miRNAs in wheat and other plant species.
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