Evidence map›Paper›PMID 23509261›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Rational reprogramming of fungal polyketide first-ring cyclization.

Yuquan Xu, Tong Zhou, Zhengfu Zhou, Shiyou Su, Sue A Roberts, William R Montfort, Jia Zeng, Ming Chen, Wei Zhang, Min Lin and 2 more

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Biosynthesis of Cytosporones in Leotiomycetous Filamentous Fungi.Journal of the American Chemical Society · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Methylglucosylation of aromatic amino and phenolic moieties of drug-like biosynthons by combinatorial biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Diversifying of Chemical Structure of NativeFrontiers in microbiology · 2018
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yuquan XuNatural Products Center, School of Natural Resources and the Environment, University of Arizona, Tucson, AZ 85706, USA.
Tong Zhou
Zhengfu Zhou
Shiyou Su
Sue A Roberts
William R Montfort
Jia Zeng
Ming Chen
Wei Zhang
Min Lin
Jixun Zhan
István Molnár

Funding

Vascular stabilization as a broad theraprutic platform for biodefenseU54AI065357 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI BENNETT, KRISTINE · 2005 to 2013
$77.5M
SALIVARY PROTEINS FROM BLOOD-SUCKING INSECTSR01HL062969 · NHLBI · UNIVERSITY OF ARIZONA · PI MONTFORT, WILLIAM R. · 2000 to 2012
$3.4M
NHLBI NIH HHS HL062969NHLBI NIH HHS R01 HL062969NIAID NIH HHS AI065357NIAID NIH HHS U54 AI065357
6 · The paper itself

Abstract

Resorcylic acid lactones and dihydroxyphenylacetic acid lactones represent important pharmacophores with heat shock response and immune system modulatory activities. The biosynthesis of these fungal polyketides involves a pair of collaborating iterative polyketide synthases (iPKSs): a highly reducing iPKS with product that is further elaborated by a nonreducing iPKS (nrPKS) to yield a 1,3-benzenediol moiety bridged by a macrolactone. Biosynthesis of unreduced polyketides requires the sequestration and programmed cyclization of highly reactive poly-β-ketoacyl intermediates to channel these uncommitted, pluripotent substrates to defined subsets of the polyketide structural space. Catalyzed by product template (PT) domains of the fungal nrPKSs and discrete aromatase/cyclase enzymes in bacteria, regiospecific first-ring aldol cyclizations result in characteristically different polyketide folding modes. However, a few fungal polyketides, including the dihydroxyphenylacetic acid lactone dehydrocurvularin, derive from a folding event that is analogous to the bacterial folding mode. The structural basis of such a drastic difference in the way a PT domain acts has not been investigated until now. We report here that the fungal vs. bacterial folding mode difference is portable on creating hybrid enzymes, and we structurally characterize the resulting unnatural products. Using structure-guided active site engineering, we unravel structural contributions to regiospecific aldol condensations and show that reshaping the cyclization chamber of a PT domain by only three selected point mutations is sufficient to reprogram the dehydrocurvularin nrPKS to produce polyketides with a fungal fold. Such rational control of first-ring cyclizations will facilitate efforts to the engineered biosynthesis of novel chemical diversity from natural unreduced polyketides.

Indexed as

Models, MolecularProtein ConformationAldehydesBase SequenceBiosynthetic PathwaysCatalytic DomainCloning, MolecularCyclizationEscherichia coliFermentationMolecular Sequence DataMolecular StructurePolyketidesPolyketide SynthasesProtein EngineeringSaccharomyces cerevisiae3-hydroxybutanalAldehydesPolyketidesPolyketide SynthasesSaccharomyces cerevisiae Proteins

Identifiers

PMID23509261
PMCPMC3619332

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.