Evidence map›Paper›PMID 23508109›Full record

ArticleMolecular and cellular biology2013

The glucocorticoid receptor and KLF15 regulate gene expression dynamics and integrate signals through feed-forward circuitry.

Sarah K Sasse, Christina M Mailloux, Andrea J Barczak, Qian Wang, Mohammed O Altonsy, Mukesh K Jain, Saptarsi M Haldar, Anthony N Gerber

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 107 citations in OpenAlex.

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  15. A Small Molecule Agonist of Krüppel-Like Factor 15 in Proteinuric Kidney Disease.Journal of the American Society of Nephrology : JASN · 2024
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Sarah K SasseDepartment of Medicine, National Jewish Health, Denver, CO, USA.
Christina M Mailloux
Andrea J Barczak
Qian Wang
Mohammed O Altonsy
Mukesh K Jain
Saptarsi M Haldar
Anthony N Gerber
National Jewish Health · USCase Western Reserve University · USUniversity of California, San Francisco · USUniversity of Colorado Denver · US

Funding

Role of Klf15 in airway smooth muscle and the response to glucocorticoidsR01HL109557 · NHLBI · NATIONAL JEWISH HEALTH · PI GERBER, ANTHONY N · 2012 to 2025
$7.2M
KLF15 and Transcriptional Control of Muscle MetabolismR01DK093821 · NIDDK · J. DAVID GLADSTONE INSTITUTES · PI HALDAR, SAPTARSI · 2013 to 2017
$1.8M
Fostering collaborations and the career of a newly recruited pulmonary scientistP30HL101294 · NHLBI · NATIONAL JEWISH HEALTH · PI MARTIN, RICHARD J · 2009 to 2010
$1.4M
NHLBI NIH HHS P30 HL101294NHLBI NIH HHS P30HL101294NHLBI NIH HHS R01 HL109557NHLBI NIH HHS R01HL109557NIDDK NIH HHS R01 DK093821
6 · The paper itself

Abstract

The glucocorticoid receptor (GR) regulates adaptive transcriptional programs that alter metabolism in response to stress. Network properties that allow GR to tune gene expression to match specific physiologic demands are poorly understood. We analyzed the transcriptional consequences of GR activation in murine lungs deficient for KLF15, a transcriptional regulator of amino acid metabolism that is induced by glucocorticoids and fasting. Approximately 7% of glucocorticoid-regulated genes had altered expression in Klf15-knockdown (Klf15(-/-)) mice. KLF15 formed coherent and incoherent feed-forward circuits with GR that correlated with the expression dynamics of the glucocorticoid response. Coherent feed-forward gene regulation by GR and KLF15 was characterized by combinatorial activation of linked GR-KLF15 regulatory elements by both factors and increased GR occupancy, while expression of KLF15 reduced GR occupancy at the incoherent target, MT2A. Serum deprivation, which increased KLF15 expression in a GR-independent manner in vitro, enhanced glucocorticoid-mediated induction of feed-forward targets of GR and KLF15, such as the loci for the amino acid-metabolizing enzymes proline dehydrogenase and alpha-aminoadipic semialdehyde synthase. Our results establish feed-forward architecture as an organizational principle for the GR network and provide a novel mechanism through which GR integrates signals and regulates expression dynamics.

Indexed as

AnimalsChromatin ImmunoprecipitationDexamethasoneDNA-Binding ProteinsFemaleGene Expression RegulationKruppel-Like Transcription FactorsLungMaleMiceMice, Inbred C57BLMice, KnockoutProline OxidasePromoter Regions, GeneticReceptors, GlucocorticoidResponse ElementsDexamethasoneDNA-Binding ProteinsKlf15 protein, mouseKruppel-Like Transcription FactorsProline OxidaseReceptors, GlucocorticoidTranscription Factors

Identifiers

PMID23508109
PMCPMC3648070
OpenAlexW2099017209

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.