Evidence map›Paper›PMID 23508106›Full record

ArticleMolecular and cellular biology2013

Loss of an Igκ gene enhancer in mature B cells results in rapid gene silencing and partial reversible dedifferentiation.

Xiaorong Zhou, Yougui Xiang, Xiaoling Ding, William T Garrard

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Frontiers in bioengineering and biotechnology · 2019
    Article
  3. Article
  4. Long-Range Regulation of V(D)J Recombination.Advances in immunology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Xiaorong ZhouDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Yougui Xiang
Xiaoling Ding
William T Garrard
The University of Texas Southwestern Medical Center · US

Funding

FUNCTION OF THE SUBUNITS OF EUKARYOTIC CHROMOSOMESR01GM029935 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GARRARD, WILLIAM · 1985 to 2013
$3.0M
Reorganization of Higher-Order Chromatin Structures During Igk Gene ActivationR01AI067906 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI GARRARD, WILLIAM · 2007 to 2011
$1.9M
NIAID NIH HHS AI067906NIAID NIH HHS R01 AI067906NIGMS NIH HHS GM29935NIGMS NIH HHS R01 GM029935
6 · The paper itself

Abstract

We address here whether there is cellular memory of a transcriptional enhancer once it has served its purpose to establish an active chromatin state. We have previously shown that the mouse Igκ gene's downstream enhancers, E3' and Ed, are essential but play redundant roles for establishing transcriptional activity in the locus during B cell development. To determine whether these enhancers are also necessary for the maintenance of transcriptional activity, we conditionally deleted E3' in mature B cells that possessed Ed(-/-) alleles. Upon E3' deletion, the locus became rapidly silenced and lost positive histone epigenetic marks, and the mature B cells partially dedifferentiated, induced RAG-1 and -2 along with certain other pro-B cell makers, and then redifferentiated after triggering Igλ gene rearrangements. We conclude that the Igκ gene's downstream enhancers are essential for both the establishment and maintenance of transcriptional activity and that there is no cellular memory of previous transcriptional activity in this locus. Furthermore, upon enhancer loss, the mature B cells unexpectedly underwent reversible retrograde differentiation. This result establishes that receptor editing can occur in mature B cells and raises the possibility that this may provide a tolerance mechanism for eliminating autoreactive B cells in the periphery.

Indexed as

Cell DedifferentiationEnhancer Elements, GeneticGene SilencingAnimalsB-LymphocytesCells, CulturedCloning, MolecularGene ExpressionGene RearrangementGenetic EngineeringImmune ToleranceImmunoglobulinsMiceMice, TransgenicSequence DeletionSpleenIgKImmunoglobulins

Identifiers

PMID23508106
PMCPMC3647977
OpenAlexW2125042102

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.