Evidence map›Paper›PMID 23508102›Full record

ArticleMolecular and cellular biology2013

Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes.

Rick van Nuland, Arne H Smits, Paschalina Pallaki, Pascal W T C Jansen, Michiel Vermeulen, H T Marc Timmers

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 150 papers.

0numbers the graph read from it
0cells of the map it votes in
150citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

150 citing papers in PubMed.

  1. Article
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  5. Biochemistry and regulation of histone lysine L-lactylation.Nature reviews. Molecular cell biology · 2026
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  12. Polycomb protein RYBP facilitates super-enhancer activity.Molecular medicine (Cambridge, Mass.) · 2024
    Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

90 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rick van NulandMolecular Cancer Research, Netherlands Proteomics Center, Utrecht, The Netherlands.
Arne H Smits
Paschalina Pallaki
Pascal W T C Jansen
Michiel Vermeulen
H T Marc Timmers

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methylation of lysine 4 on histone H3 (H3K4) at promoters is tightly linked to transcriptional regulation in human cells. At least six different COMPASS-like multisubunit (SET1/MLL) complexes that contain methyltransferase activity for H3K4 have been described, but a comprehensive and quantitative analysis of these SET1/MLL complexes is lacking. We applied label-free quantitative mass spectrometry to determine the subunit composition and stoichiometry of the human SET1/MLL complexes. We identified both known and novel, unique and shared interactors and determined their distribution and stoichiometry over the different SET1/MLL complexes. In addition to being a core COMPASS subunit, the Dpy30 protein is a genuine subunit of the NURF chromatin remodeling complex. Furthermore, we identified the Bod1 protein as a discriminator between the SET1B and SET1A complexes, and we show that the H3K36me-interactor Psip1 preferentially binds to the MLL2 complex. Finally, absolute protein quantification in crude lysates mirrors many of the observed SET1/MLL complex stoichiometries. Our findings provide a molecular framework for understanding the diversity and abundance of the different SET1/MLL complexes, which together establish the H3K4 methylation landscape in human cells.

Indexed as

Adaptor Proteins, Signal TransducingCell Cycle ProteinsCell NucleusChromatography, AffinityDNA-Binding ProteinsHeLa CellsHistone-Lysine N-MethyltransferaseHumansIntracellular Signaling Peptides and ProteinsMyeloid-Lymphoid Leukemia ProteinNeoplasm ProteinsNuclear ProteinsProtein Interaction MappingProtein SubunitsProto-Oncogene ProteinsTranscription FactorsAdaptor Proteins, Signal TransducingASH2L protein, humanBod1 protein, humanCell Cycle ProteinsDNA-Binding ProteinsDPY30 protein, humanHistone-Lysine N-MethyltransferaseIntracellular Signaling Peptides and ProteinsKMT2A protein, humanKMT2C protein, humanKMT2D protein, humanMEN1 protein, humanMLL4 protein, humanMyeloid-Lymphoid Leukemia ProteinNeoplasm ProteinsNuclear ProteinsProtein SubunitsProto-Oncogene ProteinsPSIP1 protein, humanRBBP5 protein, humanSetd1A protein, humanTranscription FactorsWDR5 protein, human

Identifiers

PMID23508102
PMCPMC3647974

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.