Evidence map›Paper›PMID 23505383›Full record

ArticlePLoS genetics2013

A natural polymorphism in rDNA replication origins links origin activation with calorie restriction and lifespan.

Elizabeth X Kwan, Eric J Foss, Scott Tsuchiyama, Gina M Alvino, Leonid Kruglyak, Matt Kaeberlein, M K Raghuraman, Bonita J Brewer, Brian K Kennedy, Antonio Bedalov

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 115 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Under the magnifying glass: The ups and downs of rDNA copy number.Seminars in cell & developmental biology · 2023
    Review
  9. Review
  10. Article
  11. Rpd3 regulates single-copy origins independently of the rDNA array by opposing Fkh1-mediated origin stimulation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. The long and short of rDNA and yeast replicative aging.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Global genomic instability caused by reduced expression of DNA polymerase ε in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Sir2 takes affirmative action to ensure equal opportunity in replication origin licensing.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. Analysis of APOBEC-induced mutations in yeast strains with low levels of replicative DNA polymerases.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Elizabeth X KwanClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Eric J Foss
Scott Tsuchiyama
Gina M Alvino
Leonid Kruglyak
Matt Kaeberlein
M K Raghuraman
Bonita J Brewer
Brian K Kennedy
Antonio Bedalov
University of Washington · USFred Hutch Cancer Center · USBuck Institute for Research on Aging · USHoward Hughes Medical Institute · US

Funding

University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI David J. Marcinek, Jessica E Young · 1995 to 2026
$27.1M
EUKARYOTIC CHROMOSOME STRUCTURE AND REPLICATIONR01GM018926 · NIGMS · UNIVERSITY OF WASHINGTON · PI BREWER, BONITA J · 1985 to 2016
$6.8M
Toward comprehensive genetic dissection of complex traits in yeastR01GM102308 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LEONID KRUGLYAK · 2012 to 2026
$3.3M
VIRAL ONCOLOGYT32CA009229 · NCI · UNIVERSITY OF WASHINGTON · PI LINIAL, MAXINE L · 1985 to 2007
$3.0M
EUKARYOTIC CHROMOSOME REPLICATIONR37GM018926 · NIGMS · UNIVERSITY OF WASHINGTON · PI FANGMAN, WALTON L · 1995 to 2004
$2.6M
Development of cambinol analogues as antilymphoma agentsR01CA129132 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BEDALOV, ANTONIO · 2008 to 2012
$1.8M
Defining the Mechanisms of genotype-dependent responses to caloric restrictionR01AG039390 · NIA · UNIVERSITY OF WASHINGTON · PI KAEBERLEIN, MATT · 2011 to 2015
$1.5M
Genome-wide Analysis of Aging in YeastR01AG025549 · NIA · UNIVERSITY OF WASHINGTON · PI KENNEDY, BRIAN K · 2006 to 2010
$1.5M
RESEARCH TRAINING IN BIOMEDICAL SCIENCESF31GM018926 · NIGMS · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI RODRIGUES, PAULA D · 1997 to 2001
$46k
NCI NIH HHS CA09229-30NCI NIH HHS CA 129132NCI NIH HHS R01 CA129132NCI NIH HHS T32 CA009229NIA NIH HHS AG013280-16NIA NIH HHS AG025549NIA NIH HHS P30 AG013280NIA NIH HHS R01 AG025549NIA NIH HHS R01 AG039390NIGMS NIH HHS F31 GM018926NIGMS NIH HHS GM18926NIGMS NIH HHS R01 GM018926NIGMS NIH HHS R01 GM102308NIGMS NIH HHS R37 GM018926
6 · The paper itself

Abstract

Aging and longevity are complex traits influenced by genetic and environmental factors. To identify quantitative trait loci (QTLs) that control replicative lifespan, we employed an outbred Saccharomyces cerevisiae model, generated by crossing a vineyard and a laboratory strain. The predominant QTL mapped to the rDNA, with the vineyard rDNA conferring a lifespan increase of 41%. The lifespan extension was independent of Sir2 and Fob1, but depended on a polymorphism in the rDNA origin of replication from the vineyard strain that reduced origin activation relative to the laboratory origin. Strains carrying vineyard rDNA origins have increased capacity for replication initiation at weak plasmid and genomic origins, suggesting that inability to complete genome replication presents a major impediment to replicative lifespan. Calorie restriction, a conserved mediator of lifespan extension that is also independent of Sir2 and Fob1, reduces rDNA origin firing in both laboratory and vineyard rDNA. Our results are consistent with the possibility that calorie restriction, similarly to the vineyard rDNA polymorphism, modulates replicative lifespan through control of rDNA origin activation, which in turn affects genome replication dynamics.

Indexed as

Saccharomyces cerevisiaeAgingCaloric RestrictionDNA-Binding ProteinsDNA ReplicationDNA, RibosomalGene Expression Regulation, FungalLongevityPolymorphism, GeneticQuantitative Trait LociReplication OriginSaccharomyces cerevisiae ProteinsSirtuin 2DNA-Binding ProteinsDNA, RibosomalFOB1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSirtuin 2

Identifiers

PMID23505383
PMCPMC3591295
OpenAlexW2058632246

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.