Evidence map›Paper›PMID 23505379›Full record

ArticlePLoS genetics2013

HIV infection disrupts the sympatric host-pathogen relationship in human tuberculosis.

Lukas Fenner, Matthias Egger, Thomas Bodmer, Hansjakob Furrer, Marie Ballif, Manuel Battegay, Peter Helbling, Jan Fehr, Thomas Gsponer, Hans L Rieder and 14 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 5 pooled it
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 5 syntheses or guidelines pooled it, 87 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. A systematic review of East African-Indian family of Mycobacterium tuberculosis in Brazil.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Pooled it
  6. Trial
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Biodiversity ofMicroorganisms · 2022
    Article
  17. Evolutionary Genetics ofMicroorganisms · 2021
    Review
  18. Article
  19. Genetic Diversity inAnnual review of genetics · 2020
    Review
  20. Phylogenetic diversity of Mycobacterium tuberculosis in two geographically distinct locations in Botswana - The Kopanyo Study.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 11 institutions in 2 countries.

Lukas FennerInstitute of Social and Preventive Medicine, University of Bern, Bern, Switzerland.
Matthias Egger
Thomas Bodmer
Hansjakob Furrer
Marie Ballif
Manuel Battegay
Peter Helbling
Jan Fehr
Thomas Gsponer
Hans L Rieder
Marcel Zwahlen
Matthias Hoffmann
Enos Bernasconi
Matthias Cavassini
Alexandra Calmy
Marisa Dolina
Reno Frei
Jean-Paul Janssens
Sonia Borrell
David Stucki
Jacques Schrenzel
Erik C Böttger
Sebastien Gagneux
Swiss HIV Cohort and Molecular Epidemiology of Tuberculosis Study Groups
University of Bern · CHUniversity Hospital of Geneva · CHUniversity of Basel · CHInstitute of Social and Preventive Medicine · CHUniversity Hospital of Basel · CHUniversity of Zurich · CHFederal Office of Public Health · CHInternational Union Against Tuberculosis and Lung Disease · FRKantonsspital St. Gallen · CHOspedale regionale di Lugano · CHScuola Cantonale di Commercio Bellinzona · CH

Funding

Observational Antiretroviral Studies In Southern Africa (OASIS) CollaborationU01AI069924 · NIAID · UNIVERSITAT BERN · PI Cleophas Chimbetete, Mary-Ann Davies · 2006 to 2026
$55.9M
Mycobacterium tuberculosis antigen diversityR01AI090928 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ERNST, JOEL D., GAGNEUX, SEBASTIEN · 2010 to 2014
$3.2M
NIAID NIH HHS 5U01-AI069924-5NIAID NIH HHS R01 AI090928NIAID NIH HHS R01-AI090928-01NIAID NIH HHS U01 AI069924PHS HHS HHSN266200700022C
6 · The paper itself

Abstract

The phylogeographic population structure of Mycobacterium tuberculosis suggests local adaptation to sympatric human populations. We hypothesized that HIV infection, which induces immunodeficiency, will alter the sympatric relationship between M. tuberculosis and its human host. To test this hypothesis, we performed a nine-year nation-wide molecular-epidemiological study of HIV-infected and HIV-negative patients with tuberculosis (TB) between 2000 and 2008 in Switzerland. We analyzed 518 TB patients of whom 112 (21.6%) were HIV-infected and 233 (45.0%) were born in Europe. We found that among European-born TB patients, recent transmission was more likely to occur in sympatric compared to allopatric host-pathogen combinations (adjusted odds ratio [OR] 7.5, 95% confidence interval [95% CI] 1.21-infinity, p = 0.03). HIV infection was significantly associated with TB caused by an allopatric (as opposed to sympatric) M. tuberculosis lineage (OR 7.0, 95% CI 2.5-19.1, p<0.0001). This association remained when adjusting for frequent travelling, contact with foreigners, age, sex, and country of birth (adjusted OR 5.6, 95% CI 1.5-20.8, p = 0.01). Moreover, it became stronger with greater immunosuppression as defined by CD4 T-cell depletion and was not the result of increased social mixing in HIV-infected patients. Our observation was replicated in a second independent panel of 440 M. tuberculosis strains collected during a population-based study in the Canton of Bern between 1991 and 2011. In summary, these findings support a model for TB in which the stable relationship between the human host and its locally adapted M. tuberculosis is disrupted by HIV infection.

Indexed as

Adaptation, PhysiologicalHost-Pathogen InteractionsMycobacterium tuberculosisTuberculosisAdultAgedCD4-Positive T-LymphocytesEvolution, MolecularFemaleHIVHIV InfectionsHumansMaleMiddle AgedMolecular EpidemiologyPhylogeography

Identifiers

PMID23505379
PMCPMC3591267
OpenAlexW2076550939

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.