Evidence map›Paper›PMID 23505205›Full record

ArticleHuman mutation2013

Novel FOXF1 mutations in sporadic and familial cases of alveolar capillary dysplasia with misaligned pulmonary veins imply a role for its DNA binding domain.

Partha Sen, Yaping Yang, Colby Navarro, Iris Silva, Przemyslaw Szafranski, Katarzyna E Kolodziejska, Avinash V Dharmadhikari, Hasnaa Mostafa, Harry Kozakewich, Debra Kearney and 72 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Human mutation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00014859 (Epidemiology of Surfactant Protein-B Deficiency), which is not on this map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00014859 completednot on this map

Epidemiology of Surfactant Protein-B Deficiency

Typeobservational_patient_registrySponsorWashington University School of MedicineRan2001 to 2024Enrolled5,176ConditionsLung Diseases, Respiratory Distress Syndrome, Newborn, Pulmonary Surfactant, Lung Diseases, Interstitial
3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 123 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Rare to "Ubiquitinous": Alveolar Capillary Dysplasia, FOXF1, and a Sly Approach to Angiogenesis.American journal of respiratory and critical care medicine · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. [Application of extracorporeal membrane oxygenation in the treatment of persistent pulmonary hypertension of the newborn].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Genetic Testing for Neonatal Respiratory Disease.Children (Basel, Switzerland) · 2021
    Review
  19. Article
  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

82 authors at 20 institutions in 13 countries.

Partha SenDepartment of Pediatrics, Baylor College of Medicine, Houston, Texas 77030, USA. psen@bcm.edu
Yaping Yang
Colby Navarro
Iris Silva
Przemyslaw Szafranski
Katarzyna E Kolodziejska
Avinash V Dharmadhikari
Hasnaa Mostafa
Harry Kozakewich
Debra Kearney
John B Cahill
Merrissa Whitt
Masha Bilic
Linda Margraf
Adrian Charles
Jack Goldblatt
Kathleen Gibson
Patrick E Lantz
A Julian Garvin
John Petty
Zeina Kiblawi
Craig Zuppan
Allyn McConkie-Rosell
Marie T McDonald
Stacey L Peterson-Carmichael
Jane T Gaede
Binoy Shivanna
Deborah Schady
Philippe S Friedlich
Stephen R Hays
Irene Valenzuela Palafoll
Ulrike Siebers-Renelt
Axel Bohring
Laura S Finn
Joseph R Siebert
Csaba Galambos
Lananh Nguyen
Melissa Riley
Nicolas Chassaing
Adeline Vigouroux
Gustavo Rocha
Susana Fernandes
Jane Brumbaugh
Kari Roberts
Luk Ho-Ming
Ivan F M Lo
Stephen Lam
Romana Gerychova
Marta Jezova
Iveta Valaskova
Florence Fellmann
Katayoun Afshar
Eric Giannoni
Vincent Muhlethaler
Jinlong Liang
Jacques S Beckmann
Janet Lioy
Hitesh Deshmukh
Lakshmi Srinivasan
Daniel T Swarr
Melissa Sloman
Charles Shaw-Smith
Rosa Laura van Loon
Cecilia Hagman
Yves Sznajer
Catherine Barrea
Christine Galant
Thierry Detaille
Jennifer A Wambach
F Sessions Cole
Aaron Hamvas
Lawrence S Prince
Karin E M Diderich
Alice S Brooks
Robert M Verdijk
Hari Ravindranathan
Ella Sugo
David Mowat
Michael L Baker
Claire Langston
Stephen Welty
Pawel Stankiewicz
Baylor College of Medicine · USAtrium Health Wake Forest Baptist · USChildren's Hospital of Philadelphia · USErasmus MC · NLDepartment of Health · CNMallinckrodt (United States) · USMasaryk University · CZMedical University of South Carolina · USUCLouvain · BEUniversity of Lausanne · CHUniversity of Pittsburgh · USDuke Medical Center · USDuke University Hospital · USHôpital Purpan · FRRoyal Devon and Exeter Hospital · GBSydney Children's Hospital · AUUniversity Hospital of Lausanne · CHUniversity of Minnesota · USUniversity of Münster · DEVanderbilt University · US

Funding

Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
VitC to Decrease Effects of Smoking in Pregnancy on Infant Lung Function-CCC-LeadR01HL105447 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI MCEVOY, CYNTHIA T · 2012 to 2021
$9.8M
EPIDEMIOLOGY OF SURFACTANT PROTEIN-B DEFICIENCYR01HL065174 · NHLBI · WASHINGTON UNIVERSITY · PI COLE, FRANCIS SESSIONS · 2001 to 2013
$9.3M
MEDICAL GENETICS RESEARCH TRAINING GRANTT32GM008638 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca Ganetzky · 1997 to 2026
$8.7M
FGF-10 Expression in a Fetal Mouse Lung Model of Bronchopulmonary DysplasiaR01HL086324 · NHLBI · VANDERBILT UNIVERSITY · PI PRINCE, LAWRENCE S · 2008 to 2017
$3.7M
Role of Fetal Lung Macrophages in Broncopulmonary DysplasiaR01HL097195 · NHLBI · VANDERBILT UNIVERSITY · PI BLACKWELL, TIMOTHY S., PRINCE, LAWRENCE S · 2009 to 2013
$2.6M
Indiana Pediatric Scientist Award(IPSA)K12HD068371 · NICHD · INDIANA UNIVERSITY INDIANAPOLIS · PI CLAPP, DAVID W · 2013 to 2017
$1.9M
Pathogenetics of the FOX transcription factor gene cluster on 16q24.1R01HL101975 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI STANKIEWICZ, PAWEL · 2010 to 2013
$1.8M
Imaging Activated Macrophages in the LungsR01HL116358 · NHLBI · VANDERBILT UNIVERSITY · PI BLACKWELL, TIMOTHY S., PRINCE, LAWRENCE S · 2012 to 2014
$1.1M
The role of the long non-coding RNA Falcor in early endoderm and lung developmentK08HL130666 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI SWARR, DANIEL, T (MD) TODD · 2016 to 2020
$807k
SURFACTANT PATHWAY GENE VARIANTS AMONG INFANTS WITH RESPIRATORY DISTRESS SYNDROMEK08HL105891 · NHLBI · WASHINGTON UNIVERSITY · PI WAMBACH, JENNIFER · 2011 to 2013
$377k
NCATS NIH HHS UL1 TR001108NHLBI NIH HHS 1R01HL101975-01NHLBI NIH HHS K08 HL105891NHLBI NIH HHS K08 HL130666NHLBI NIH HHS L40 HL098005NHLBI NIH HHS R01 HL065174NHLBI NIH HHS R01 HL086324NHLBI NIH HHS R01 HL097195NHLBI NIH HHS R01 HL101975NHLBI NIH HHS R01 HL105447NHLBI NIH HHS R01 HL116358NIAID NIH HHS L40 AI096442NICHD NIH HHS K12 HD068371NIGMS NIH HHS L40 GM102895NIGMS NIH HHS T32 GM008638
6 · The paper itself

Abstract

Alveolar capillary dysplasia with misalignment of pulmonary veins (ACD/MPV) is a rare and lethal developmental disorder of the lung defined by a constellation of characteristic histopathological features. Nonpulmonary anomalies involving organs of gastrointestinal, cardiovascular, and genitourinary systems have been identified in approximately 80% of patients with ACD/MPV. We have collected DNA and pathological samples from more than 90 infants with ACD/MPV and their family members. Since the publication of our initial report of four point mutations and 10 deletions, we have identified an additional 38 novel nonsynonymous mutations of FOXF1 (nine nonsense, seven frameshift, one inframe deletion, 20 missense, and one no stop). This report represents an up to date list of all known FOXF1 mutations to the best of our knowledge. Majority of the cases are sporadic. We report four familial cases of which three show maternal inheritance, consistent with paternal imprinting of the gene. Twenty five mutations (60%) are located within the putative DNA-binding domain, indicating its plausible role in FOXF1 function. Five mutations map to the second exon. We identified two additional genic and eight genomic deletions upstream to FOXF1. These results corroborate and extend our previous observations and further establish involvement of FOXF1 in ACD/MPV and lung organogenesis.

Indexed as

MutationAmino Acid SequenceChromosome MappingDatabases, GeneticFemaleForkhead Transcription FactorsGene DosageGene OrderHumansInfantInfant, NewbornMaleMolecular Sequence DataOpen Reading FramesPersistent Fetal Circulation SyndromeProtein Interaction Domains and MotifsForkhead Transcription FactorsFOXF1 protein, human

Identifiers

PMID23505205
PMCPMC3663886
OpenAlexW2017822230

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.