Evidence map›Paper›PMID 23500522›Full record

ArticleExperimental eye research2013

Exon-level expression profiling of ocular tissues.

Alex H Wagner, V Nikhil Anand, Wan-Heng Wang, Jon E Chatterton, Duo Sun, Allan R Shepard, Nasreen Jacobson, Iok-Hou Pang, Adam P Deluca, Thomas L Casavant and 4 more

Open access · greenAbstract read
In one paragraph

Article in Experimental eye research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed, 11 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 11 syntheses or guidelines pooled it, 103 citations in OpenAlex.

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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Alex H WagnerDepartment of Biomedical Engineering, University of Iowa, Iowa City, IA 52242, USA.
V Nikhil Anand
Wan-Heng Wang
Jon E Chatterton
Duo Sun
Allan R Shepard
Nasreen Jacobson
Iok-Hou Pang
Adam P Deluca
Thomas L Casavant
Todd E Scheetz
Robert F Mullins
Terry A Braun
Abbot F Clark
University of Iowa · USAlcon (United States) · USSmith-Kettlewell Eye Research Institute · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008629 · NIGMS · UNIVERSITY OF IOWA · PI EBERL, DANIEL F · 1997 to 2021
$4.1M
Molecular Genetics of Age Related Macular DegenerationR01EY016822 · NEI · UNIVERSITY OF IOWA · PI STONE, EDWIN M · 2005 to 2013
$4.0M
Bioinformatics Training in the Life Sciences and BiomedicineT32GM082729 · NIGMS · UNIVERSITY OF IOWA · PI CASAVANT, THOMAS L. · 2009 to 2013
$544k
NEI NIH HHS R01 EY016822NIGMS NIH HHS T32 GM008629NIGMS NIH HHS T32 GM082729NIGMS NIH HHS T32GM082729
6 · The paper itself

Abstract

The normal gene expression profiles of the tissues in the eye are a valuable resource for considering genes likely to be involved with disease processes. We profiled gene expression in ten ocular tissues from human donor eyes using Affymetrix Human Exon 1.0 ST arrays. Ten different tissues were obtained from six different individuals and RNA was pooled. The tissues included: retina, optic nerve head (ONH), optic nerve (ON), ciliary body (CB), trabecular meshwork (TM), sclera, lens, cornea, choroid/retinal pigment epithelium (RPE) and iris. Expression values were compared with publically available Expressed Sequence Tag (EST) and RNA-sequencing resources. Known tissue-specific genes were examined and they demonstrated correspondence of expression with the representative ocular tissues. The estimated gene and exon level abundances are available online at the Ocular Tissue Database.

Indexed as

Oligonucleotide Array Sequence AnalysisTranscriptomeChoroidCiliary BodyExonsEye BanksHumansLens, CrystallineOcular Physiological PhenomenaOptic DiskRetinaScleraTrabecular Meshwork

Identifiers

PMID23500522
PMCPMC3664108
OpenAlexW2085167343

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.