Evidence map›Paper›PMID 23498935›Full record

ReviewCell2013

Dynamic integration of splicing within gene regulatory pathways.

Ulrich Braunschweig, Serge Gueroussov, Alex M Plocik, Brenton R Graveley, Benjamin J Blencowe

Abstract readReview
In one paragraph

Review in Cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 247 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
247citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

247 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Promoter Specificity and Transcription Levels ModulateInternational journal of molecular sciences · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Downregulation of Splicing FactorCurrent issues in molecular biology · 2024
    Article
  19. Article
  20. Article

187 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ulrich BraunschweigBanting and Best Department of Medical Research, Donnelly Centre, University of Toronto, Toronto, ON M5S 1A8, Canada.
Serge Gueroussov
Alex M Plocik
Brenton R Graveley
Benjamin J Blencowe

Funding

Comprhensive analysis of functional RNA elements encoded in the human genomeU54HG007005 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2012 to 2017
$12.5M
Alternative Splicing of the Drosophilia Dscam Pre-mRNAR01GM067842 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2003 to 2014
$3.6M
Trans-Splicing in DrosophilaR01GM095296 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2011 to 2014
$1.6M
Comprehensive Discovery of Functional Elements of the Drosphila TranscriptomeU54HG006994 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CELNIKER, SUSAN E · 2012 to 2012
$1.0M
Mechanisms of cell-type specific Dscam isoform expressionF32GM105264 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI PLOCIK, ALEX M · 2013 to 2015
$148k
CIHRNHGRI NIH HHS U54 HG006994NHGRI NIH HHS U54 HG007005NIGMS NIH HHS F32 GM105264NIGMS NIH HHS R01 GM067842NIGMS NIH HHS R01 GM095296
6 · The paper itself

Abstract

Precursor mRNA splicing is one of the most highly regulated processes in metazoan species. In addition to generating vast repertoires of RNAs and proteins, splicing has a profound impact on other gene regulatory layers, including mRNA transcription, turnover, transport, and translation. Conversely, factors regulating chromatin and transcription complexes impact the splicing process. This extensive crosstalk between gene regulatory layers takes advantage of dynamic spatial, physical, and temporal organizational properties of the cell nucleus, and further emphasizes the importance of developing a multidimensional understanding of splicing control.

Indexed as

Gene Regulatory NetworksRNA SplicingAlternative SplicingAnimalsCell NucleusChromatinHumansRegulatory Sequences, Ribonucleic AcidTranscription, GeneticChromatinRegulatory Sequences, Ribonucleic Acid

Identifiers

PMID23498935
PMCPMC3642998

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.