ArticleBMC genomics2013
Pearl millet [Pennisetum glaucum (L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs.
Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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46 citing papers in PubMed, 123 citations in OpenAlex.
- QTL mapping and candidate gene identification for fodder quality traits in Pearl millet.BMC plant biology · 2025Article
- Mapping QTLs forFrontiers in plant science · 2025Article
- Novel SNPs Linked to Blast Resistance Genes Identified in Pearl Millet Through Genome-Wide Association Models.International journal of molecular sciences · 2024Article
- Variation in SSRs at different genomic regions and implications for the evolution and identification of Armillaria gallica.PloS one · 2024Article
- Pattern and variation in simple sequence repeat (SSR) at different genomic regions and its implications to maize evolution and breeding.BMC genomics · 2023Article
- Genetic insights in pearl millet breeding in the genomic era: challenges and prospects.Plant biotechnology reports · 2023Review
- Article
- Genome-Wide Expression and Physiological Profiling of Pearl Millet Genotype Reveal the Biological Pathways and Various Gene Clusters Underlying Salt Resistance.Frontiers in plant science · 2022Article
- Breeding Drought-Tolerant Pearl Millet Using Conventional and Genomic Approaches: Achievements and Prospects.Frontiers in plant science · 2022Review
- Development of a new AgriSeq 4K mid-density SNP genotyping panel and its utility in pearl millet breeding.Frontiers in plant science · 2022Article
- Identification of genes controlling compatible and incompatible reactions of pearl millet (Frontiers in plant science · 2022Article
- Heterotic pools in African and Asian origin populations of pearl millet [Pennisetum glaucum (L.) R. Br.].Scientific reports · 2021Article
- Multi-Environment Quantitative Trait Loci Mapping for Grain Iron and Zinc Content Using Bi-parental Recombinant Inbred Line Mapping Population in Pearl Millet.Frontiers in plant science · 2021Article
- Addressing Iron and Zinc Micronutrient Malnutrition Through Nutrigenomics in Pearl Millet: Advances and Prospects.Frontiers in genetics · 2021Review
- Pearl Millet: A Climate-Resilient Nutricereal for Mitigating Hidden Hunger and Provide Nutritional Security.Frontiers in plant science · 2021Review
- Comparative transcriptome analysis reveals the genes and pathways involved in terminal drought tolerance in pearl millet.Plant molecular biology · 2020Article
- Exploitation of Heterosis in Pearl Millet: A Review.Plants (Basel, Switzerland) · 2020Review
- Unraveling candidate genes underlying biomass digestibility in elephant grass (Cenchrus purpureus).BMC plant biology · 2019Article
- Article
- Genome-Wide Association Studies and Genomic Selection in Pearl Millet: Advances and Prospects.Frontiers in genetics · 2019Review
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Authors and funding
14 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPearl millet [Pennisetum glaucum (L.) R. Br.] is a widely cultivated drought- and high-temperature tolerant C4 cereal grown under dryland, rainfed and irrigated conditions in drought-prone regions of the tropics and sub-tropics of Africa, South Asia and the Americas. It is considered an orphan crop with relatively few genomic and genetic resources. This study was undertaken to increase the EST-based microsatellite marker and genetic resources for this crop to facilitate marker-assisted breeding.
resultsNewly developed EST-SSR markers (99), along with previously mapped EST-SSR (17), genomic SSR (53) and STS (2) markers, were used to construct linkage maps of four F7 recombinant inbred populations (RIP) based on crosses ICMB 841-P3 × 863B-P2 (RIP A), H 77/833-2 × PRLT 2/89-33 (RIP B), 81B-P6 × ICMP 451-P8 (RIP C) and PT 732B-P2 × P1449-2-P1 (RIP D). Mapped loci numbers were greatest for RIP A (104), followed by RIP B (78), RIP C (64) and RIP D (59). Total map lengths (Haldane) were 615 cM, 690 cM, 428 cM and 276 cM, respectively. A total of 176 loci detected by 171 primer pairs were mapped among the four crosses. A consensus map of 174 loci (899 cM) detected by 169 primer pairs was constructed using MergeMap to integrate the individual linkage maps. Locus order in the consensus map was well conserved for nearly all linkage groups. Eighty-nine EST-SSR marker loci from this consensus map had significant BLAST hits (top hits with e-value ≤ 1E-10) on the genome sequences of rice, foxtail millet, sorghum, maize and Brachypodium with 35, 88, 58, 48 and 38 loci, respectively.
conclusionThe consensus map developed in the present study contains the largest set of mapped SSRs reported to date for pearl millet, and represents a major consolidation of existing pearl millet genetic mapping information. This study increased numbers of mapped pearl millet SSR markers by >50%, filling important gaps in previously published SSR-based linkage maps for this species and will greatly facilitate SSR-based QTL mapping and applied marker-assisted selection programs.
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