Evidence map›Paper›PMID 23497306›Full record

ArticleBMC genomics2013

Characterization and differential expression of microRNAs in the ovaries of pregnant and non-pregnant goats (Capra hircus).

Xiao-Dong Zhang, Yun-Hai Zhang, Ying-Hui Ling, Ya Liu, Hong-Guo Cao, Zong-Jun Yin, Jian-Ping Ding, Xiao-Rong Zhang

Abstract read
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Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

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35citing papers in PubMed
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3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Xiao-Dong ZhangAnhui Provincial Laboratory of Local Animal Genetic Resources Conservation and Biobreeding, No, 130 Changjiang west road, Hefei 230036, PR China.
Yun-Hai Zhang
Ying-Hui Ling
Ya Liu
Hong-Guo Cao
Zong-Jun Yin
Jian-Ping Ding
Xiao-Rong Zhang

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOvarian follicular development and hormone secretion are complex and coordinated biological processes which will usually be altered during pregnancy. Ovarian function is tightly regulated by a multitude of genes, and also by some specific miRNAs. It is necessary to identify the differentially expressed miRNAs in the ovaries of pregnant and non-pregnant mammals, in order to further understand the role of miRNA-mediated post-transcriptional regulation in mammalian reproduction. Here, we performed a comprehensive search for hircine miRNAs using two small RNA sequencing libraries prepared from the ovaries of pregnant and non-pregnant goats.

results617 conserved and 7 putative novel miRNAs were identified in the hircine ovaries. A total of 471 conserved miRNAs (76.34%) were co-expressed in both pregnant and non-pregnant libraries, and 90 pregnancy-specific and 56 non-pregnancy-specific conserved miRNAs were identified. Additionally, 407 unique miRNAs (65.96%) were significantly differentially expressed in the pregnant and non-pregnant libraries, of which 294 were upregulated and 113 were downregulated in the pregnant library compared to the non-pregnant library. Further analysis showed that miR-143 was predicted to bind to the target sequences of Frizzled-6 and -3 receptor genes in the Wnt/beta-catenin signaling pathway, and let-7b may target the Activin receptor I and Smad 2/3 genes in the TGF-beta signaling pathway. The expression level of 5 randomly selected miRNAs were analyzed by quantitative real-time PCR (q-PCR), and the results demonstrated that the expression patterns were consistent with the Solexa sequencing results.

conclusionsThe identification and characterization of differentially expressed miRNAs in the ovaries of pregnant and non-pregnant goats provides important information on the role of miRNA in the regulation of the ovarian development and function. This data will be helpful to facilitate studies on the regulation of miRNAs during mammalian reproduction.

Indexed as

Gene Expression ProfilingAnimalsBase SequenceBreedingConserved SequenceFemaleGoatsHigh-Throughput Nucleotide SequencingMicroRNAsOvaryPregnancyReproducibility of ResultsReproductionMicroRNAs

Identifiers

PMID23497306
PMCPMC3599660

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.