Evidence map›Paper›PMID 23497240›Full record

ArticleMicrobial cell factories2013

Optimizing heterologous protein production in the periplasm of E. coli by regulating gene expression levels.

Susan Schlegel, Edurne Rujas, Anders Jimmy Ytterberg, Roman A Zubarev, Joen Luirink, Jan-Willem de Gier

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 137 citations in OpenAlex.

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  14. Overexpression of the Bam Complex Improves the Production ofInternational journal of molecular sciences · 2022
    Article
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  20. Strategies to Enhance Periplasmic Recombinant Protein Production Yields inFrontiers in bioengineering and biotechnology · 2021
    Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Susan SchlegelCenter for Biomembrane Research, Department of Biochemistry and Biophysics, Stockholm University, Stockholm SE-106 91, Sweden.
Edurne Rujas
Anders Jimmy Ytterberg
Roman A Zubarev
Joen Luirink
Jan-Willem de Gier
Stockholm University · SEKarolinska Institutet · SEVrije Universiteit Amsterdam · NL

Funding

New approaches for facilitating membrane protein overexpression and purificationR01GM081827 · NIGMS · STOCKHOLM UNIVERSITY · PI VON HEIJNE, GUNNAR · 2007 to 2009
$713k
NIGMS NIH HHS 5R01GM081827-03
6 · The paper itself

Abstract

backgroundIn Escherichia coli many heterologous proteins are produced in the periplasm. To direct these proteins to the periplasm, they are equipped with an N-terminal signal sequence so that they can traverse the cytoplasmic membrane via the protein-conducting Sec-translocon. For poorly understood reasons, the production of heterologous secretory proteins is often toxic to the cell thereby limiting yields. To gain insight into the mechanism(s) that underlie this toxicity we produced two secretory heterologous proteins, super folder green fluorescent protein and a single-chain variable antibody fragment, in the Lemo21(DE3) strain. In this strain, the expression intensity of the gene encoding the target protein can be precisely controlled.

resultsBoth SFGFP and the single-chain variable antibody fragment were equipped with a DsbA-derived signal sequence. Producing these proteins following different gene expression levels in Lemo21(DE3) allowed us to identify the optimal expression level for each target gene. Too high gene expression levels resulted in saturation of the Sec-translocon capacity as shown by hampered translocation of endogenous secretory proteins and a protein misfolding/aggregation problem in the cytoplasm. At the optimal gene expression levels, the negative effects of the production of the heterologous secretory proteins were minimized and yields in the periplasm were optimized.

conclusionsSaturating the Sec-translocon capacity can be a major bottleneck hampering heterologous protein production in the periplasm. This bottleneck can be alleviated by harmonizing expression levels of the genes encoding the heterologous secretory proteins with the Sec-translocon capacity. Mechanistic insight into the production of proteins in the periplasm is key to optimizing yields in this compartment.

Indexed as

Escherichia coliEscherichia coli ProteinsGene ExpressionGreen Fluorescent ProteinsPeriplasmProtein Disulfide-IsomerasesProtein Sorting SignalsProtein TransportRecombinant Fusion ProteinsSingle-Chain AntibodiesdsbA protein, E coliEscherichia coli ProteinsGreen Fluorescent ProteinsProtein Disulfide-IsomerasesProtein Sorting SignalsRecombinant Fusion ProteinsSingle-Chain Antibodies

Identifiers

PMID23497240
PMCPMC3605120
OpenAlexW2151567065

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.