Evidence map›Paper›PMID 23497217›Full record

ArticleMicrobial cell factories2013

Escherichia coli avoids high dissolved oxygen stress by activation of SoxRS and manganese-superoxide dismutase.

Antonino Baez, Joseph Shiloach

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 79 citations in OpenAlex.

  1. Aerotolerant capacity of the lung symbiontJournal of bacteriology · 2026
    Article
  2. Review
  3. A Novel Indigoidine-like NRPS Gene fromAntioxidants (Basel, Switzerland) · 2026
    Article
  4. Review
  5. Article
  6. Microorganisms · 2023
    Article
  7. Article
  8. kFrontiers in bioengineering and biotechnology · 2023
    Article
  9. Article
  10. Involvement ofInternational journal of molecular sciences · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Inhibition ofThe veterinary quarterly · 2020
    Article
  15. The Industrial OrganismAntioxidants (Basel, Switzerland) · 2020
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Antonino BaezBiotechnology Core Laboratory, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Joseph Shiloach
National Institute of Diabetes and Digestive and Kidney Diseases · USNational Institutes of Health · US

Funding

Understanding metabolism and stress conditions of recombinant microorganismsZIADK075081 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI SHILOACH, JOSEPH · 2012 to 2022
$2.6M
Intramural NIH HHS
6 · The paper itself

Abstract

backgroundHigh concentrations of reactive oxygen species (ROS) were reported to cause oxidative stress to E. coli cells associated with reduced or inhibited growth. The high ROS concentrations described in these reports were generated by exposing the bacteria to H2O2 and superoxide-generating chemicals which are non-physiological growth conditions. However, the effect of molecular oxygen on oxidative stress response has not been evaluated. Since the use of oxygen-enriched air is a common strategy to support high density growth of E. coli, it was important to investigate the effect of high dissolved oxygen concentrations on the physiology and growth of E. coli and the way it responds to oxidative stress.

resultsTo determine the effect of elevated oxygen concentrations on the growth characteristics, specific gene expression and enzyme activity in E. coli, the parental and SOD-deficient strain were evaluated when the dissolved oxygen (dO2) level was increased from 30% to 300%. No significant differences in the growth parameters were observed in the parental strain except for a temporary decrease of the respiration and acetate accumulation profile. By performing transcriptional analysis, it was determined that the parental strain responded to the oxidative stress by activating the SoxRS regulon. However, following the dO2 switch, the SOD-deficient strain activated both the SoxRS and OxyR regulons but it was unable to resume its initial growth rate.

conclusionThe transcriptional analysis and enzyme activity results indicated that when E. coli is exposed to dO2 shift, the superoxide stress regulator SoxRS is activated and causes the stimulation of the superoxide dismutase system. This enables the E. coli to protect itself from the poisoning effects of oxygen. The OxyR protecting system was not activated, indicating that H2O2 did not increase to stressing levels.

Indexed as

Acetic AcidBacterial ProteinsEscherichia coliEscherichia coli ProteinsHydrogen PeroxideOxidative StressOxygenRegulonRepressor ProteinsSuperoxide DismutaseTrans-ActivatorsTranscription FactorsTranscription, GeneticAcetic AcidBacterial ProteinsEscherichia coli ProteinsHydrogen PeroxideOxygenoxyR protein, E coliRepressor ProteinsSoxR protein, BacteriaSoxS protein, E coliSuperoxide DismutaseTrans-ActivatorsTranscription Factors

Identifiers

PMID23497217
PMCPMC3605374
OpenAlexW2169528116

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.