Evidence map›Paper›PMID 23497209›Full record

ArticleVirology journal2013

The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5.

Andrew M Kropinski, Tom Waddell, Juncai Meng, Kristyn Franklin, Hans-Wolfgang Ackermann, Rafiq Ahmed, Amanda Mazzocco, John Yates, Erika J Lingohr, Roger P Johnson

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 68 citations in OpenAlex.

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  10. Characterization and Genomic Analysis ofInternational journal of molecular sciences · 2022
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  15. Biological characteristics and genomic analysis of a novelFrontiers in cellular and infection microbiology · 2022
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  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Andrew M KropinskiPublic Health Agency of Canada, Laboratory for Foodborne Diseases, 110 Stone Road West, Guelph, ON N1G 3W4, Canada.
Tom Waddell
Juncai Meng
Kristyn Franklin
Hans-Wolfgang Ackermann
Rafiq Ahmed
Amanda Mazzocco
John Yates
Erika J Lingohr
Roger P Johnson
Public Health Agency of Canada · CAAbbott (Canada) · CAMerck & Co., Inc., Rahway, NJ, USA (United States) · USScripps Research Institute · USUniversité Laval · CAUniversity of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBacteriophages (phages) have been used extensively as analytical tools to type bacterial cultures and recently for control of zoonotic foodborne pathogens in foods and in animal reservoirs.

methodsWe examined the host range, morphology, genome and proteome of the lytic E. coli O157 phage rV5, derived from phage V5, which is a member of an Escherichia coli O157:H7 phage typing set.

resultsPhage rV5 is a member of the Myoviridae family possessing an icosahedral head of 91 nm between opposite apices. The extended tail measures 121 x 17 nm and has a sheath of 44 x 20 nm and a 7 nm-wide core in the contracted state. It possesses a 137,947 bp genome (43.6 mol%GC) which encodes 233 ORFs and six tRNAs. Until recently this virus appeared to be phylogenetically isolated with almost 70% of its gene products ORFans. rV5 is closely related to coliphages Delta and vB-EcoM-FY3, and more distantly related to Salmonella phages PVP-SE1 and SSE-121, Cronobacter sakazakii phage vB_CsaM_GAP31, and coliphages phAPEC8 and phi92. A complete shotgun proteomic analysis was carried out on rV5, extending what had been gleaned from the genomic analyses. Host range studies revealed that rV5 is active against several other E. coli.

Indexed as

Genome, ViralHost SpecificityBacteriophagesEscherichia coli O157GenomicsMolecular Sequence DataMyoviridaeOpen Reading FramesPhylogenyProteomicsViral ProteinsViral Proteins

Identifiers

PMID23497209
PMCPMC3606486
OpenAlexW2115639442

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.