ArticleBMC bioinformatics2013
CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes.
Article in BMC bioinformatics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Complete mitochondrial genome and phylogenetic analysis of the sea anemoneMitochondrial DNA. Part B, Resources · 2026Article
- Explainable coronary artery disease prediction model based on AutoGluon from AutoML framework.Frontiers in cardiovascular medicine · 2024Article
- Complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
- Progress, challenge and prospect of plant plastome annotation.Frontiers in plant science · 2023Review
- Chloroplast Genome Annotation Tools: Prolegomena to the Identification of Inverted Repeats.International journal of molecular sciences · 2022Article
- Phylogenetic relationships in the Sorghum genus based on sequencing of the chloroplast and nuclear genes.The plant genome · 2021Article
- The complete mitochondrial DNA genome of a cone snail,Mitochondrial DNA. Part B, Resources · 2021Article
- Complete chloroplast genome sequence ofChinese herbal medicines · 2020Article
- PACVr: plastome assembly coverage visualization in R.BMC bioinformatics · 2020Article
- Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.PloS one · 2019Article
- The complete chloroplast genome ofPeerJ · 2019Article
- The complete chloroplast genome of the green algae Hariotina reticulata (Scenedesmaceae, Sphaeropleales, Chlorophyta).Genes & genomics · 2018Article
- Article
- A novel fast vector method for genetic sequence comparison.Scientific reports · 2017Article
- Characterization of the complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2017Article
- Chloroplast Genome Sequence Annotation ofPLoS currents · 2017Article
- Complete Chloroplast Genome Sequence of Dendrobium nobile from Northeastern India.Genome announcements · 2016Article
- The complete mitochondrial DNA sequence of the green algaeMitochondrial DNA. Part B, Resources · 2016Article
- Complete mitochondrial genome of a DHA-rich protistMitochondrial DNA. Part B, Resources · 2016Article
- Complete Chloroplast Genome Sequence of Aquilaria sinensis (Lour.) Gilg and Evolution Analysis within the Malvales Order.Frontiers in plant science · 2016Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundChloroplast is an essential organelle in plants which contains independent genome. Chloroplast genomes have been widely used for plant phylogenetic inference recently. The number of complete chloroplast genomes increases rapidly with the development of various genome sequencing projects. However, no comprehensive platform or tool has been developed for the comparative and phylogenetic analysis of chloroplast genomes. Thus, we constructed a comprehensive platform for the comparative and phylogenetic analysis of complete chloroplast genomes which was named as chloroplast genome analysis platform (CGAP).
resultsCGAP is an interactive web-based platform which was designed for the comparative analysis of complete chloroplast genomes. CGAP integrated genome collection, visualization, content comparison, phylogeny analysis and annotation functions together. CGAP implemented four web servers including creating complete and regional genome maps of high quality, comparing genome features, constructing phylogenetic trees using complete genome sequences, and annotating draft chloroplast genomes submitted by users.
conclusionsBoth CGAP and source code are available at http://www.herbbol.org:8000/chloroplast. CGAP will facilitate the collection, visualization, comparison and annotation of complete chloroplast genomes. Users can customize the comparative and phylogenetic analysis using their own unpublished chloroplast genomes.
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