Evidence map›Paper›PMID 23496771›Full record

ArticleMolecular ecology2013

RAD-Seq derived markers flank the shell colour and banding loci of the Cepaea nemoralis supergene.

Paul M Richards, M Maureen Liu, Natalie Lowe, John W Davey, Mark L Blaxter, Angus Davison

Open access · bronzeAbstract read
In one paragraph

Article in Molecular ecology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
9.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 90 citations in OpenAlex.

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  10. Whole-genome re-sequencing data to infer historical demography and speciation processes in land snails: the study of twoPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
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  19. Genomics of coloration in natural animal populations.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Paul M RichardsCentre for Genetics and Genomics, School of Biology, University of Nottingham, Nottingham, NG7 2RD, UK.
M Maureen Liu
Natalie Lowe
John W Davey
Mark L Blaxter
Angus Davison
University of Nottingham · GBInstitut de Biologia Evolutiva · ES

Funding

Biotechnology and Biological Sciences Research Council BB/F018940/1Biotechnology and Biological Sciences Research Council BB/F021135/1Medical Research Council MR/K001744/1Wellcome Trust 095831
6 · The paper itself

Abstract

Studies on the classic shell colour and banding polymorphism of the land snail Cepaea played a crucial role in establishing the importance of natural selection in maintaining morphological variation. Cepaea is also a pre-eminent model for ecological genetics because the outward colour and banding phenotype is entirely genetically determined, primarily by a 'supergene' of at least five loci. Unfortunately, progress in understanding the evolution and maintenance of the Cepaea polymorphism stalled, partly because of a lack of genetic markers. With a view to re-establish Cepaea as a prominent model of molecular ecology, we made six laboratory crosses of Cepaea nemoralis, five of which segregated for shell ground colour (C) and the presence or absence of bands (B). First, scoring of colour and banding in 323 individuals found no recombination between the C and B loci of the supergene. Second, using restriction site-associated DNA sequencing (RAD-Seq) of two parents and 22 offspring, we identified 44 anonymous markers putatively linked to the colour (C) and banding (B) loci. The genotype of eleven of the most promising RAD-Seq markers was independently validated in the same 22 offspring, then up to a further 146 offspring were genotyped. The closest RAD-Seq markers scored are within ~0.6 centimorgan (cM) of the C-B supergene linkage group, with the combined loci together forming a 35.8 cM linkage map of markers that flank both sides of the Cepaea C-B supergene.

Indexed as

AnimalsAnimal ShellsChromosome MappingGenetic MarkersHigh-Throughput Nucleotide SequencingPhenotypePigmentationPolymorphism, Single NucleotideRecombination, GeneticSelection, GeneticSequence Analysis, DNASnailsGenetic Markers

Identifiers

PMID23496771
PMCPMC3712483
OpenAlexW2119663457

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.