Evidence map›Paper›PMID 23495851›Full record

ArticleThe British journal of dermatology2013

Genetic associations of psoriasis in a Pakistani population.

P A Shaiq, P E Stuart, A Latif, C Schmotzer, A H Kazmi, M S Khan, M Azam, T Tejasvi, J J Voorhees, G K Raja and 3 more

Open access · greenAbstract read
In one paragraph

Article in The British journal of dermatology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Association of CARD14 Single-Nucleotide Polymorphisms with Psoriasis.International journal of molecular sciences · 2022
    Article
  3. Article
  4. HLA-Cw1 and Psoriasis.American journal of clinical dermatology · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Genetic Epidemiology of Psoriasis.Current dermatology reports · 2014
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

P A ShaiqPMAS-Arid Agriculture University Rawalpindi, Rawalpindi, Pakistan.
P E Stuart
A Latif
C Schmotzer
A H Kazmi
M S Khan
M Azam
T Tejasvi
J J Voorhees
G K Raja
J T Elder
R Qamar
R P Nair
University of Michigan–Ann Arbor · USBenazir Bhutto Hospital · PKCOMSATS University Islamabad · PKPir Mehr Ali Shah Arid Agriculture University · PKIsra University · PKMayo Clinic · US

Funding

Linkage analysis of familial psoriasis(Supplement)R01AR042742 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 1994 to 2021
$10.1M
Genetic and Genomic Dissection of Psoriatic ArthritisR01AR063611 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD, GLADMAN, DAFNA D · 2012 to 2023
$6.2M
Identification of Psoriatic Arthritis Genes in the MHCR01AR050511 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 2004 to 2013
$4.2M
Functional Genomics of PsoriasisR01AR065183 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 2013 to 2016
$1.7M
NIAMS NIH HHS R01 AR042742NIAMS NIH HHS R01AR042742NIAMS NIH HHS R01 AR050511NIAMS NIH HHS R01AR050511NIAMS NIH HHS R01 AR063611NIAMS NIH HHS R01 AR065183
6 · The paper itself

Abstract

backgroundGenetic predisposition to psoriasis, an inflammatory skin disease affecting 0·2-4% of the world population, is well established. Thus far, 41 psoriasis susceptibility loci reach genome-wide significance (P ≤ 5 × 10(-8) ). Identification of genetic susceptibility loci in diverse populations will help understand the underlying biology of psoriasis susceptibility.

objectivesThe primary objective of this study was to examine psoriasis susceptibility associations previously reported in Chinese and caucasian populations in a Pakistani cohort.

methodsBlood samples and phenotype data were collected from psoriasis cases and controls in Islamabad, Pakistan. DNA was isolated and genotypes of selected susceptibility markers were determined. The data were analysed using χ(2) tests or logistic regression for psoriasis association.

resultsHLA-Cw6 showed the strongest association [odds ratio (OR) 2·43, P = 2·3 × 10(-12) ]. HLA-Cw1 showed marginally significant association (OR 1·66, P = 0·049), suggesting that the HLA-Cw1-B46 risk haplotype may be present in the Pakistani population. Three other loci (IL4/IL13, NOS2, TRAF3IP2) showed nominally significant association (P < 0·05).

conclusionsHLA-Cw6 is strongly associated with psoriasis susceptibility in the Pakistani population, as has been found in every other population studied. In addition, HLA-Cw1 showed marginal association, reflecting the relative geographical proximity and thus likely genetic relatedness to other populations in which the HLA-Cw1-B46 haplotype is known to be associated. A larger cohort and a denser marker set will be required for further analysis of psoriasis associations in the South Asian population.

Indexed as

Adaptor Proteins, Signal TransducingAdultAge of OnsetFemaleGenetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHaplotypesHLA-C AntigensHumansInterleukin-13MaleNitric Oxide Synthase Type IIPakistanPolymorphism, Single NucleotideAdaptor Proteins, Signal TransducingHLA-C*06 antigenHLA-C AntigensHLA-Cw1 antigenInterleukin-13Nitric Oxide Synthase Type IINOS2 protein, humanTRAF3IP2 protein, humanTumor Necrosis Factor Receptor-Associated Peptides and Proteins

Identifiers

PMID23495851
PMCPMC3731395
OpenAlexW2061655778

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.