Evidence map›Paper›PMID 23494302›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2013

One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012.

Petra Fey, Robert J Dodson, Siddhartha Basu, Rex L Chisholm

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed.

  1. Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Loss of Copine D Leads to Ras Activation inbioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. bioRxiv : the preprint server for biology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Two endogenousProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. The Amoeba Dictyostelium discoideum as Novel Production Host for Complex Substances.Advances in biochemical engineering/biotechnology · 2025
    Review
  19. Article
  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Petra FeydictyBase and the Dicty Stock Center, Center for Genetic Medicine, Northwestern University, Chicago, IL, USA. pfey@northwestern.edu
Robert J Dodson
Siddhartha Basu
Rex L Chisholm

Funding

Development of DictyBase, an online informatics resourceR01GM064426 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L · 2002 to 2019
$8.3M
The Dictyostelium Stock CenterR01GM087371 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L · 2009 to 2019
$2.4M
NHGRI NIH HHS HG0022.SNIGMS NIH HHS GM087371NIGMS NIH HHS GM64426NIGMS NIH HHS R01 GM064426NIGMS NIH HHS R01 GM087371
6 · The paper itself

Abstract

dictyBase (http://dictybase.org), the model organism database for Dictyostelium discoideum, includes the complete genome sequence and expression data for this organism. Relevant literature is integrated into the database, and gene models and functional annotation are manually curated from experimental results and comparative multigenome analyses. dictyBase has recently expanded to include the genome sequences of three additional Dictyostelids and has added new software tools to facilitate multigenome comparisons. The Dicty Stock Center, a strain and plasmid repository for Dictyostelium research, has relocated to Northwestern University in 2009. This allowed us integrating all Dictyostelium resources to better serve the research community. In this chapter, we will describe how to navigate the Web site and highlight some of our newer improvements.

Indexed as

Databases, GeneticUser-Computer InterfaceBase SequenceData MiningDictyosteliumGenome, ProtozoanMolecular Sequence AnnotationMolecular Sequence DataPhenotypeProtozoan ProteinsSearch EngineSoftwareProtozoan Proteins

Identifiers

PMID23494302
PMCPMC3762881

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.